Swate template RNASeq computational analysis
Transcriptomics, RNA-Seq, Computation
v1.2.0 released on 01/01/0001
by Hajira Jabeen, Dominik Brilhaus, Oliver Maus, Martin Kuhl
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Parameter [data filtering software] | Term Source REF (DPBO:0000023) | Term Accession Number (DPBO:0000023) | Parameter [data filtering software version] | Term Source REF (DPBO:0000024) | Term Accession Number (DPBO:0000024) | Parameter [data filtering software parameters] | Term Source REF (DPBO:0000025) | Term Accession Number (DPBO:0000025) | Parameter [read alignment software] | Term Source REF (DPBO:0000002) | Term Accession Number (DPBO:0000002) | Parameter [read alignment software version] | Term Source REF (DPBO:0000003) | Term Accession Number (DPBO:0000003) | Parameter [read alignment software parameters] | Term Source REF (DPBO:0000004) | Term Accession Number (DPBO:0000004) | Parameter [genome reference sequence] | Term Source REF (DPBO:0000026) | Term Accession Number (DPBO:0000026) | Parameter [processed data file format] | Term Source REF (DPBO:0000027) | Term Accession Number (DPBO:0000027) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Trimmomatic | user-specific | Kallisto | user-specific | 0.45.1 | user-specific | kallisto quant -b 50 -t 10 | user-specific | .xlsx | user-specific | ||||||||||||||||||||
| HiSat2 | user-specific | .txt | user-specific | ||||||||||||||||||||||||||
| star | ENVO | https://bioregistry.io/ENVO:01000801 | .csv | user-specific | |||||||||||||||||||||||||
| BWA | user-specific |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.2.0 | RNASeq computational analysis | 01/01/0001 |