Swate template Study minimal MPIMP Fernie
v1.0.0 released on 01/01/0001
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Characteristic [organism] | Term Source REF (OBI:0100026) | Term Accession Number (OBI:0100026) | Characteristic [genetic population background information] | Term Source REF (OBI:0001225) | Term Accession Number (OBI:0001225) | Characteristic [alias] | Term Source REF (DPBO:0002000) | Term Accession Number (DPBO:0002000) | Characteristic [genotype] | Term Source REF (EFO:0000513) | Term Accession Number (EFO:0000513) | Parameter [organism part] | Term Source REF (EFO:0000635) | Term Accession Number (EFO:0000635) | Parameter [growth environment] | Term Source REF (OBI:0000997) | Term Accession Number (OBI:0000997) | Parameter [growth day length] | Term Source REF (DPBO:0000041) | Term Accession Number (DPBO:0000041) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| growth protocol | EFO | https://bioregistry.io/EFO:0003789 | growth_protocol.txt | Arabidopsis thaliana | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_3702 | Col-0 | EFO | https://bioregistry.io/EFO:0005148 | Wild Type | NCIT | https://bioregistry.io/NCIT:C62195 | Wild Type | NCIT | https://bioregistry.io/NCIT:C62195 | leaf | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0025034 | greenhouse | AGRO | http://purl.obolibrary.org/obo/AGRO_00000363 | short day length exposure | PECO | https://bioregistry.io/PECO:0007200 | ||
| growth protocol | EFO | https://bioregistry.io/EFO:0003789 | growth_protocol.txt | Solanum lycopersicum | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_4081 | MoneyMaker | user-specific | Solyc10g074590#30 | panK4-1 | user-specific | fruit | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0009001 | growth chamber study | PECO | https://bioregistry.io/PECO:0007269 | long day length exposure | PECO | https://bioregistry.io/PECO:0007199 | ||||||
| growth protocol | EFO | https://bioregistry.io/EFO:0003789 | growth_protocol.txt | Phaseolus vulgaris | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_3885 | PDS1-OX1.5 | PDS1-GFP | seed | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0009010 | field | ENVO | https://bioregistry.io/ENVO:01000352 | continuous light exposure | PECO | https://bioregistry.io/PECO:0007162 | |||||||||
| growth protocol | EFO | https://bioregistry.io/EFO:0003789 | growth_protocol.txt | Lotus japonicus | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_34305 | Wild Type | NCIT | https://bioregistry.io/NCIT:C62195 | root | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0009005 | tissue culture | ENVO | https://bioregistry.io/ENVO:02000007 |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | Study minimal MPIMP Fernie | 01/01/0001 |