Swate template MIGS - Genome Sequence
MIGS, Genomics, DNA Sequencing, mandatory, Assembly
v1.0.0 released on 01/01/0001
145 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Component [next generation sequencing instrument model] | Term Source REF (DPBO:0000040) | Term Accession Number (DPBO:0000040) | Component [assembly software] | Term Source REF (DPBO:1000234) | Term Accession Number (DPBO:1000234) | Parameter [sequence assembly algorithm version] | Term Source REF (DPBO:0000060) | Term Accession Number (DPBO:0000060) | Parameter [assembly parameters] | Term Source REF (DPBO:1000235) | Term Accession Number (DPBO:1000235) | Characteristic [genome assembly quality] | Term Source REF (DPBO:1000236) | Term Accession Number (DPBO:1000236) | Characteristic [contig count] | Term Source REF (GENEPIO:0000093) | Term Accession Number (GENEPIO:0000093) | Output [Data] | Data Format | Data Selector Format |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Illumina MiSeq | EFO | https://bioregistry.io/EFO:0004205 | metaSPAdes | 3.11.0 | kmer set 21,33,55,77,99,121, default parameters otherwise | High-quality draft genome | 40 |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | MIGS - Genome Sequence | 01/01/0001 |