Swate template Plant sampling
v1.0.1 released on 01/01/0001
by Hajira Jabeen, Dominik Brilhaus, Oliver Maus, Martin Kuhl, Xiaoran Zhou, Stella Eggels
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Characteristic [organism] | Term Source REF (OBI:0100026) | Term Accession Number (OBI:0100026) | Characteristic [genotype] | Term Source REF (EFO:0000513) | Term Accession Number (EFO:0000513) | Characteristic [biological replicate] | Term Source REF (DPBO:0000042) | Term Accession Number (DPBO:0000042) | Characteristic [organism part] | Term Source REF (EFO:0000635) | Term Accession Number (EFO:0000635) | Characteristic [plant age] | Unit | Term Source REF (DPBO:0000033) | Term Accession Number (DPBO:0000033) | Characteristic [whole plant development stage] | Term Source REF (PO:0007033) | Term Accession Number (PO:0007033) | Characteristic [whole plant size] | Unit | Term Source REF (TO:1000012) | Term Accession Number (TO:1000012) | Characteristic [phenotype] | Term Source REF (DPBO:0000073) | Term Accession Number (DPBO:0000073) | Characteristic [plant disease] | Term Source REF (PSO:0000013) | Term Accession Number (PSO:0000013) | Characteristic [plant disease stage] | Term Source REF (DPBO:0000072) | Term Accession Number (DPBO:0000072) | Parameter [sample collection date] | Term Source REF (GENEPIO:0001174) | Term Accession Number (GENEPIO:0001174) | Parameter [Reference Time Point] | Term Source REF (NCIT:C82576) | Term Accession Number (NCIT:C82576) | Parameter [sample collected by] | Term Source REF (GENEPIO:0001153) | Term Accession Number (GENEPIO:0001153) | Parameter [sample collection method] | Term Source REF (DPBO:0000009) | Term Accession Number (DPBO:0000009) | Parameter [metabolism quenching method] | Term Source REF (DPBO:0000010) | Term Accession Number (DPBO:0000010) | Parameter [sample storage] | Term Source REF (DPBO:0000011) | Term Accession Number (DPBO:0000011) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sample collection protocol | EFO | https://bioregistry.io/EFO:0005518 | Zea mays cv. B73 | EFO | https://bioregistry.io/EFO:0007022 | wild type genotype | EFO | https://bioregistry.io/EFO:0005168 | 1 | leaf | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0025034 | 27 | day | UO | https://bioregistry.io/UO:0000033 | V5 | 50 | centimeter | UO | https://bioregistry.io/UO:0000015 | decreased height | PATO | https://bioregistry.io/PATO:0000569 | common rust | Mild | NCIT | https://bioregistry.io/NCIT:C70666 | 03.06.2024 | Sowing 14.04.2024 | Max | cut leaf, remove midrib | Liquid Nitrogen | NCIT | https://bioregistry.io/NCIT:C68796 | -80 °C freezer |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.1 | Plant sampling | 01/01/0001 |