Swate template MibiNet phototrophic cultivation conditions
culture, phototrophic, photosynthesis
v1.0.0 released on 11/02/2026
2 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Protocol Uri | Characteristic [Organism] | Term Source REF (MIAPPE:0041) | Term Accession Number (MIAPPE:0041) | Parameter [Biological replicate] | Term Source REF (NFDI4PSO:0000042) | Term Accession Number (NFDI4PSO:0000042) | Component [cultivation device] | Term Source REF () | Term Accession Number () | Parameter [cultivation container] | Term Source REF () | Term Accession Number () | Parameter [culture medium] | Term Source REF (OBI:0000079) | Term Accession Number (OBI:0000079) | Parameter [culture medium volume] | Unit | Term Source REF (DPBO:1000155) | Term Accession Number (DPBO:1000155) | Parameter [start OD750] | Term Source REF () | Term Accession Number () | Parameter [temperature] | Unit | Term Source REF (EFO:0001702) | Term Accession Number (EFO:0001702) | Parameter [shaker frequency] | Unit | Term Source REF () | Term Accession Number () | Parameter [Light intensity] | Unit | Term Source REF (MIAPPE:0101) | Term Accession Number (MIAPPE:0101) | Parameter [light quality] | Term Source REF () | Term Accession Number () | Parameter [light regimen] | Term Source REF () | Term Accession Number () | Parameter [Atmospheric CO2 concentration] | Unit | Term Source REF () | Term Accession Number () | Parameter [humidity] | Unit | Term Source REF (PATO:0015009) | Term Accession Number (PATO:0015009) | Parameter [growth time] | Unit | Term Source REF (DPBO:0000100) | Term Accession Number (DPBO:0000100) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Synechocystis_WT | ./protocols/Phototrophic_cultivation.md | Synechocystis sp. PCC 6803 | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_1148 | 1 | Multitron photoincubator | 100 ml shake flask | BG11 | 50 | milliliter | UO | https://bioregistry.io/UO:0000098 | 0.1 | 30 | degree Celsius | UO | https://bioregistry.io/UO:0000027 | 150 | Revolution per Minute | NCIT | https://bioregistry.io/NCIT:C70469 | 50 | micromole photons per square meter per second | white LED | 12 h light / 12 h dark | 0.5 | percent | UO | https://bioregistry.io/UO:0000187 | 75 | percent | UO | https://bioregistry.io/UO:0000187 | 72 | hour | UO | https://bioregistry.io/UO:0000032 | preculture_Syn_WT_1 |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | MibiNet phototrophic cultivation conditions | 11/02/2026 |