Swate template GEO - High-throughput sequencing - Sample
Plant, sample, Transcriptomics, mandatory
v1.0.3 released on 05/21/2025
by Martin Kuhl, Stella Eggels, Hannah Dörpholz
39 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Characteristic [organism] | Term Source REF (OBI:0100026) | Term Accession Number (OBI:0100026) | Characteristic [Tissue] | Term Source REF (DPBO:0000112) | Term Accession Number (DPBO:0000112) | Characteristic [sample description] | Term Source REF (DPBO:0000175) | Term Accession Number (DPBO:0000175) | Characteristic [Molecule] | Term Source REF (NCIT:C63816) | Term Accession Number (NCIT:C63816) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| extraction protocol | EFO | https://bioregistry.io/EFO:0000490 | RNA_Extraction.txt | Zea mays | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_4577 | leaf | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0025034 | leaf 5, day 5, rep 1 | total RNA | EFO | https://bioregistry.io/EFO:0004964 |