Swate template SRA - Sequencing
mandatory, Next Generation Sequencing
v1.0.2 released on 01/01/0001
by Angela Kranz
145 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol Description | Characteristic [BioSample accession number] | Term Source REF (DPBO:0000078) | Term Accession Number (DPBO:0000078) | Characteristic [library ID] | Term Source REF (DPBO:0000087) | Term Accession Number (DPBO:0000087) | Characteristic [title] | Term Source REF (DPBO:0002002) | Term Accession Number (DPBO:0002002) | Parameter [library strategy] | Term Source REF (GENEPIO:0001973) | Term Accession Number (GENEPIO:0001973) | Characteristic [library source] | Term Source REF (GENEPIO:0001965) | Term Accession Number (GENEPIO:0001965) | Parameter [library selection] | Term Source REF (GENEPIO:0001940) | Term Accession Number (GENEPIO:0001940) | Parameter [library layout] | Term Source REF (DPBO:0000015) | Term Accession Number (DPBO:0000015) | Parameter [next generation sequencing platform] | Term Source REF (DPBO:0000057) | Term Accession Number (DPBO:0000057) | Component [next generation sequencing instrument model] | Term Source REF (DPBO:0000040) | Term Accession Number (DPBO:0000040) | Parameter [raw data file format] | Term Source REF (DPBO:0000021) | Term Accession Number (DPBO:0000021) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| library construction protocol | Illumina library preparation using TruSeq RNA Sample Prep Kit v2 | SAMN00000000 | RNASeq of Zea mays: developing cob leaf | RNA-Seq | EFO | https://bioregistry.io/EFO:0008896 | Transcriptomic | Quantitative Reverse Transcriptase PCR | NCIT | https://bioregistry.io/NCIT:C28408 | single-end | DPBO | http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000086 | Illumina | Illumina HiSeq 4000 | EFO | https://bioregistry.io/EFO:0008563 | FASTQ | EDAM | http://purl.obolibrary.org/obo/EDAM_1930 |