Swate template MibiNet bioreactor cultivation conditions
growth condition, bioreactor, cultivation
v2.0.0 released on 11/02/2026
3 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Protocol Uri | Parameter [Well] | Term Source REF (NFDI4PSO:1000101) | Term Accession Number (NFDI4PSO:1000101) | Characteristic [Organism] | Term Source REF (MIAPPE:0041) | Term Accession Number (MIAPPE:0041) | Parameter [culture medium] | Term Source REF (OBI:0000079) | Term Accession Number (OBI:0000079) | Parameter [culture medium volume] | Unit | Term Source REF (DPBO:1000155) | Term Accession Number (DPBO:1000155) | Parameter [start OD600] | Term Source REF (DPBO:0000101) | Term Accession Number (DPBO:0000101) | Component [cultivation device] | Term Source REF () | Term Accession Number () | Parameter [sample plate type] | Term Source REF (MS:1001938) | Term Accession Number (MS:1001938) | Parameter [filterset] | Term Source REF () | Term Accession Number () | Parameter [temperature] | Unit | Term Source REF (EFO:0001702) | Term Accession Number (EFO:0001702) | Parameter [humidity] | Unit | Term Source REF (PATO:0015009) | Term Accession Number (PATO:0015009) | Parameter [Oxygen] | Unit | Term Source REF (NCIT:C722) | Term Accession Number (NCIT:C722) | Parameter [Carbon Dioxide] | Unit | Term Source REF (NCIT:C65288) | Term Accession Number (NCIT:C65288) | Parameter [pH] | Term Source REF () | Term Accession Number () | Parameter [shaker frequency] | Unit | Term Source REF () | Term Accession Number () | Parameter [cycle time] | Unit | Term Source REF () | Term Accession Number () | Parameter [experiment time] | Unit | Term Source REF () | Term Accession Number () | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| preculture_WT_1 | ./protocols/BioLector_cultivation.md | A1 | Corynebacterium glutamicum | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_1718 | CGXII medium 2% glucose | 0.75 | milliliter | UO | https://bioregistry.io/UO:0000098 | 0.5 | BioLector I | MTP-48-FlowerPlate | backscatter (620 nm, gain 20) | 30 | degree Celsius | UO | https://bioregistry.io/UO:0000027 | 85 | percent | UO | https://bioregistry.io/UO:0000187 | 20.95 | percent | UO | https://bioregistry.io/UO:0000187 | 0 | percent | UO | https://bioregistry.io/UO:0000187 | 7.0 | 1200 | Revolution per Minute | NCIT | https://bioregistry.io/NCIT:C70469 | 15 | minute | UO | https://bioregistry.io/UO:0000031 | 24 | hour | UO | https://bioregistry.io/UO:0000032 | biolector_run_1.csv |