Swate template Genomics assay
Genomics, assay, DNA Sequencing
v1.1.7 released on 01/01/0001
by Angela Kranz, Dominik Brilhaus
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Parameter [BioSample Accession Number] | Term Source REF (NCIT:C175889) | Term Accession Number (NCIT:C175889) | Parameter [library strategy] | Term Source REF (DPBO:0000035) | Term Accession Number (DPBO:0000035) | Parameter [library source] | Term Source REF (GENEPIO:0001965) | Term Accession Number (GENEPIO:0001965) | Parameter [library selection] | Term Source REF (DPBO:0000036) | Term Accession Number (DPBO:0000036) | Parameter [library layout] | Term Source REF (DPBO:0000015) | Term Accession Number (DPBO:0000015) | Parameter [library preparation kit] | Term Source REF (GENEPIO:0000085) | Term Accession Number (GENEPIO:0000085) | Parameter [library preparation kit version] | Term Source REF (GENEPIO:0000149) | Term Accession Number (GENEPIO:0000149) | Parameter [adapter sequence] | Term Source REF (GENEPIO:0000083) | Term Accession Number (GENEPIO:0000083) | Parameter [library DNA amount] | Term Source REF (DPBO:0000056) | Term Accession Number (DPBO:0000056) | Parameter [next generation sequencing platform] | Term Source REF (DPBO:0000057) | Term Accession Number (DPBO:0000057) | Parameter [next generation sequencing instrument model] | Term Source REF (DPBO:0000040) | Term Accession Number (DPBO:0000040) | Parameter [base-calling software] | Term Source REF (DPBO:0000017) | Term Accession Number (DPBO:0000017) | Parameter [base-calling software version] | Term Source REF (DPBO:0000018) | Term Accession Number (DPBO:0000018) | Parameter [library strand] | Term Source REF (DPBO:0000020) | Term Accession Number (DPBO:0000020) | Parameter [read length] | Term Source REF (GENEPIO:0000076) | Term Accession Number (GENEPIO:0000076) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RNA-Seq strategy | GENOMIC | cDNA method | paired-end | Illumina TrueSeq | v2 | ACTTGA | HiSeq 2000 | Illumina Casava | 1.70 | R1 | ||||||||||||||||||||||||||||||||||||
| ChIP-Seq strategy | TRANSCRIPTOMIC | size fractionation method | Single-end | TAGCTT | R2 | |||||||||||||||||||||||||||||||||||||||||
| ssRNA-seq | METAGENOMIC | PolyA | CGTACG | Forward | ||||||||||||||||||||||||||||||||||||||||||
| METATRANSCRIPTOMIC | ||||||||||||||||||||||||||||||||||||||||||||||
| SYNTHETIC |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.1.7 | Genomics assay | 01/01/0001 |