Swate template CIMR - Chromatography
CIMR, Metabolomics, Chromatography, chemical analysis
v1.0.0 released on 01/01/0001
145 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Parameter [sample resuspension] | Term Source REF (DPBO:0000169) | Term Accession Number (DPBO:0000169) | Parameter [derivatization] | Term Source REF (MSIO:0000111) | Term Accession Number (MSIO:0000111) | Parameter [spiking] | Term Source REF (CHMO:0002852) | Term Accession Number (CHMO:0002852) | Component [chromatography instrument model] | Term Source REF (DPBO:0000046) | Term Accession Number (DPBO:0000046) | Parameter [Control software name] | Term Source REF (CAO:000053) | Term Accession Number (CAO:000053) | Parameter [Control software version] | Term Source REF (CAO:000054) | Term Accession Number (CAO:000054) | Component [chromatography autosampler model] | Term Source REF (DPBO:0000047) | Term Accession Number (DPBO:0000047) | Parameter [chromatography injection volume] | Unit | Term Source REF (DPBO:0010014) | Term Accession Number (DPBO:0010014) | Parameter [autosampler wash cycles] | Term Source REF (DPBO:0000164) | Term Accession Number (DPBO:0000164) | Parameter [solvent] | Term Source REF (CHEBI:46787) | Term Accession Number (CHEBI:46787) | Component [chromatography column model] | Term Source REF (DPBO:0000048) | Term Accession Number (DPBO:0000048) | Component [chromatography guard column model] | Term Source REF (DPBO:0000049) | Term Accession Number (DPBO:0000049) | Parameter [Stationary Phase] | Term Source REF (NCIT:C70673) | Term Accession Number (NCIT:C70673) | Parameter [physical column parameters] | Term Source REF (DPBO:0000165) | Term Accession Number (DPBO:0000165) | Parameter [chromatography column inner diameter] | Unit | Term Source REF (CHMO:0002753) | Term Accession Number (CHMO:0002753) | Parameter [chromatography column length] | Unit | Term Source REF (CHMO:0002752) | Term Accession Number (CHMO:0002752) | Parameter [chromatography column separation mode] | Term Source REF (AFR:0003034) | Term Accession Number (AFR:0003034) | Parameter [autosampler temperature setting] | Unit | Term Source REF (AFR:0001538) | Term Accession Number (AFR:0001538) | Parameter [chromatography injection mode] | Term Source REF (DPBO:0010015) | Term Accession Number (DPBO:0010015) | Parameter [post-column split] | Term Source REF (DPBO:0000168) | Term Accession Number (DPBO:0000168) | Parameter [mobile phase constituents] | Term Source REF (DPBO:0000139) | Term Accession Number (DPBO:0000139) | Parameter [flow rate] | Unit | Term Source REF (PATO:0001574) | Term Accession Number (PATO:0001574) | Parameter [chromatography pressure] | Term Source REF (DPBO:0000166) | Term Accession Number (DPBO:0000166) | Parameter [chromatography gradient] | Term Source REF (DPBO:0000081) | Term Accession Number (DPBO:0000081) | Output [Data] | Data Format | Data Selector Format |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chloroform | CHEBI | https://bioregistry.io/CHEBI:35255 | trimethylsilyl derivatization | heptadecanoic acid | Shimadzu GCMS-QP2010 Ultra | OpenLab CDS | 2.7 | GCMS-TQ series multifunctional autosampler AOC-6000 | 2 | microliter | UO | https://bioregistry.io/UO:0000101 | 3 cycles with 50:50 Methanol:Water | chloroform | CHEBI | https://bioregistry.io/CHEBI:35255 | Zebron ZB-AAA GC | SH-IP Guard Column | C18 | coating 0.25 µm | 0.25 | millimeter | UO | https://bioregistry.io/UO:0000016 | 10 | meter | UO | https://bioregistry.io/UO:0000008 | reversed phase column | OBI | https://bioregistry.io/OBI:0000510 | 250 | degree celsius | UO | https://bioregistry.io/UO:0000027 | splitless injection | afo | http://purl.obolibrary.org/obo/AFP_0003684 | none | Acetonitrile + 0.1% formic acid | 1 | Milliliter per Minute | NCIT | https://bioregistry.io/NCIT:C64777 | 1 bar | start at 25 °C, increase 2°C/min, final 50°C |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | CIMR - Chromatography | 01/01/0001 |