Swate template MTH00029
Metabolomics, assay, Mass Spectrometry
v1.0.0 released on 01/01/0001
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Parameter [MS sample post-extraction] | Term Source REF (DPBO:0000043) | Term Accession Number (DPBO:0000043) | Parameter [MS sample resuspension] | Term Source REF (DPBO:0000044) | Term Accession Number (DPBO:0000044) | Parameter [MS sample type] | Term Source REF (DPBO:0000045) | Term Accession Number (DPBO:0000045) | Parameter [MS derivatization] | Term Source REF (DPBO:0000052) | Term Accession Number (DPBO:0000052) | Parameter [chromatography instrument model] | Term Source REF (DPBO:0000046) | Term Accession Number (DPBO:0000046) | Parameter [chromatography autosampler model] | Term Source REF (DPBO:0000047) | Term Accession Number (DPBO:0000047) | Parameter [chromatography column type] | Term Source REF (DPBO:0000053) | Term Accession Number (DPBO:0000053) | Parameter [chromatography column model] | Term Source REF (DPBO:0000048) | Term Accession Number (DPBO:0000048) | Parameter [mobile phase] | Term Source REF () | Term Accession Number () | Parameter [chromatography injection volume] | Unit | Term Source REF (DPBO:0010014) | Term Accession Number (DPBO:0010014) | Parameter [chromatography injection mode] | Term Source REF (DPBO:0010015) | Term Accession Number (DPBO:0010015) | Parameter [chromatography gradient] | Term Source REF (DPBO:0000081) | Term Accession Number (DPBO:0000081) | Parameter [scan polarity] | Term Source REF (MS:1000465) | Term Accession Number (MS:1000465) | Parameter [scan window lower limit] | Term Source REF (MS:1000501) | Term Accession Number (MS:1000501) | Parameter [scan window upper limit] | Term Source REF (MS:1000500) | Term Accession Number (MS:1000500) | Component [instrument model] | Term Source REF (MS:1000031) | Term Accession Number (MS:1000031) | Parameter [ionization type] | Term Source REF (MS:1000008) | Term Accession Number (MS:1000008) | Parameter [mass analyzer type] | Term Source REF (MS:1000443) | Term Accession Number (MS:1000443) | Parameter [detector type] | Term Source REF (MS:1000026) | Term Accession Number (MS:1000026) | Parameter [detector acquisition mode] | Term Source REF (MS:1000027) | Term Accession Number (MS:1000027) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| assay protocol | DPBO | http://purl.org/nfdi4plants/ontology/dpbo/DPBO_1000177 | MTH00029 | user-specific | user-specific | user-specific | methoxyamination + trimethylsylilation (TMS) | user-specific | Agilent 7890A GC | user-specific | GERSTEL MultiPurpose Sampler (MPS) Dual Head | user-specific | low polarity | user-specific | HP-5MS Agilent 19091S-433 | user-specific | helium | user-specific | 1 | microliter | UO | https://bioregistry.io/UO:0000101 | 70 °C for 2 min; ramped at 12.5 °C per min to 320 °C; held constant for 5 min; total run time 27 min | user-specific | positive | user-specific | 60 | user-specific | 800 | user-specific | Agilent 5977B GC/MSD | electron impact; 70V; 200 °C | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1000073 | single quadrupole | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1000081 |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | MTH00029 | 01/01/0001 |