Swate template ENA - Plant sample
mandatory, Plant, sample, nucleotide, Sequencing Data, Genomics, Transcriptomics
v1.0.3 released on 01/01/0001
by Stella Eggels, Xiaoran Zhou
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Characteristic [organism] | Term Source REF (OBI:0100026) | Term Accession Number (OBI:0100026) | Characteristic [taxonomy: NCBI TaxID] | Term Source REF (MS:1001467) | Term Accession Number (MS:1001467) | Characteristic [plant structure development stage] | Term Source REF (PO:0009012) | Term Accession Number (PO:0009012) | Characteristic [sample collection date] | Term Source REF (GENEPIO:0001174) | Term Accession Number (GENEPIO:0001174) | Characteristic [geographic area] | Term Source REF (DPBO:0000074) | Term Accession Number (DPBO:0000074) | Characteristic [latitude] | Term Source REF (SIO:000319) | Term Accession Number (SIO:000319) | Characteristic [longitude] | Term Source REF (SIO:000318) | Term Accession Number (SIO:000318) | Characteristic [plant structure] | Term Source REF (PO:0009011) | Term Accession Number (PO:0009011) | Parameter [plant growth medium exposure] | Term Source REF (PECO:0007147) | Term Accession Number (PECO:0007147) | Parameter [isolation and growth condition] | Term Source REF (DPBO:0000030) | Term Accession Number (DPBO:0000030) | Characteristic [Sample description] | Term Source REF (MIAPPE:0079) | Term Accession Number (MIAPPE:0079) | Characteristic [Sample ID] | Term Source REF (MIAPPE:0076) | Term Accession Number (MIAPPE:0076) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Input1 | Zea mays | NCBITAXON | http://purl.obolibrary.org/obo/NCBITAXON_4577 | 4577 | flowering stage | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0007616 | 2022-08-23 | Germany | NCIT | https://bioregistry.io/NCIT:C16636 | +50.55 | +6.21 | flag leaf | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0020103 | soil | ENVO | https://bioregistry.io/ENVO:00001998 | https://doi.org/10.1038/nature22971 | apical 10 cm of the flag leaf, frozen in liquid nitrogen | Sp1 | sample1 |