Swate template ArrayExpress - Microarray
Microarray, Transcriptomics, mandatory
v1.0.0 released on 05/15/2025
by Stella Eggels, Hannah Dörpholz
120 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Parameter [experiment type] | Term Source REF (AFR:0002229) | Term Accession Number (AFR:0002229) | Parameter [nucleic acid extraction protocol] | Term Source REF (EFO:0002944) | Term Accession Number (EFO:0002944) | Component [DNA Microarray Chip] | Term Source REF (NCIT:C18158) | Term Accession Number (NCIT:C18158) | Parameter [dye label] | Term Source REF (MI:0373) | Term Accession Number (MI:0373) | Parameter [nucleic acid labeling protocol] | Term Source REF (EFO:0003813) | Term Accession Number (EFO:0003813) | Parameter [nucleic acid hybridization to array protocol] | Term Source REF (EFO:0003815) | Term Accession Number (EFO:0003815) | Parameter [array scanning and feature extraction protocol] | Term Source REF (EFO:0003814) | Term Accession Number (EFO:0003814) | Output [Data] | Data Format | Data Selector Format |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| transcription profiling by array | RNA_extraction.txt | A-AFFY-16 | cy3 label | mi | http://purl.obolibrary.org/obo/MI_0375 | labeling_protocol.txt | hybridization_protocol.txt | array_scan_extraction.txt |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | ArrayExpress - Microarray | 05/15/2025 |