Swate template Genome assembly
Genomics, Assembly, DNA Sequencing
v1.1.8 released on 01/01/0001
by Angela Kranz, Dominik Brilhaus, Oliver Maus
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Characteristic [BioSample Accession Number] | Term Source REF (NCIT:C175889) | Term Accession Number (NCIT:C175889) | Component [data filtering software] | Term Source REF (DPBO:0000023) | Term Accession Number (DPBO:0000023) | Parameter [data filtering software version] | Term Source REF (DPBO:0000024) | Term Accession Number (DPBO:0000024) | Parameter [data filtering software parameters] | Term Source REF (DPBO:0000025) | Term Accession Number (DPBO:0000025) | Component [next generation sequencing instrument model] | Term Source REF (DPBO:0000040) | Term Accession Number (DPBO:0000040) | Component [sequence assembly algorithm] | Term Source REF (OBI:0001522) | Term Accession Number (OBI:0001522) | Parameter [sequence assembly algorithm version] | Term Source REF (DPBO:0000060) | Term Accession Number (DPBO:0000060) | Characteristic [sequence assembly name] | Term Source REF (OBI:0001948) | Term Accession Number (OBI:0001948) | Parameter [genome coverage] | Term Source REF (OBI:0001939) | Term Accession Number (OBI:0001939) | Parameter [genome status] | Term Source REF (DPBO:0000061) | Term Accession Number (DPBO:0000061) | Parameter [genome reference sequence] | Term Source REF (DPBO:0000026) | Term Accession Number (DPBO:0000026) | Parameter [processed data file format] | Term Source REF (DPBO:0000027) | Term Accession Number (DPBO:0000027) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAMN00000000 | CLC Genomics Workbench | v11.0.1 | quality limit: 0.05 | Illumina Genome Analyzer IIx | EFO | https://bioregistry.io/EFO:0004202 | SPAdes | 3.15.4 | 10x | full | B74 RefGen_v4 | txt |