2365b905-4cd0-4a0f-828e-d19d1dc2a4b2

Swate template RPTU - MBS, growth

Algae, growth, Proteomics

v1.0.0 released on 01/01/0001

by Frederik Sommer, Martin Kuhl, Oliver Maus

145 Downloads


Template Content

Building Blocks + example values

Input [Source Name]Characteristic [organism]Term Source REF (OBI:0100026)Term Accession Number (OBI:0100026)Characteristic [genetic population background information]Term Source REF (OBI:0001225)Term Accession Number (OBI:0001225)Characteristic [Knock-out]Term Source REF (NCIT:C22491)Term Accession Number (NCIT:C22491)Characteristic [genetic modification]Term Source REF (EFO:0000510)Term Accession Number (EFO:0000510)Characteristic [genetic modification]Term Source REF (EFO:0000510)Term Accession Number (EFO:0000510)Characteristic [phenotype]Term Source REF (EFO:0000651)Term Accession Number (EFO:0000651)Characteristic [Cell Density]UnitTerm Source REF (NCIT:C120538)Term Accession Number (NCIT:C120538)Parameter [culture medium]Term Source REF (OBI:0000079)Term Accession Number (OBI:0000079)Parameter [culture medium volume]UnitTerm Source REF (DPBO:1000155)Term Accession Number (DPBO:1000155)Parameter [growth day length]UnitTerm Source REF (DPBO:0000041)Term Accession Number (DPBO:0000041)Parameter [day light intensity exposure]UnitTerm Source REF (PECO:0007193)Term Accession Number (PECO:0007193)Parameter [temperature]UnitTerm Source REF (EFO:0001702)Term Accession Number (EFO:0001702)Parameter [abiotic plant exposure]UnitTerm Source REF (PECO:0007191)Term Accession Number (PECO:0007191)Parameter [Exposure Duration]UnitTerm Source REF (NCIT:C83280)Term Accession Number (NCIT:C83280)Parameter [cell collecting]Term Source REF (OBI:0001483)Term Accession Number (OBI:0001483)Parameter [sample storage]UnitTerm Source REF (DPBO:0000011)Term Accession Number (DPBO:0000011)Characteristic [plasmid]Term Source REF (OBI:0000430)Term Accession Number (OBI:0000430)Parameter [study variable attribute]Term Source REF (MS:1001807)Term Accession Number (MS:1001807)Parameter [time series, time point X]Term Source REF (MS:1001815)Term Accession Number (MS:1001815)Characteristic [biological replicate group]Term Source REF (DPBO:1000183)Term Accession Number (DPBO:1000183)Output [Sample Name]
Flask1Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific4000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018111user-specificB1C1-1-1
Flask2Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific4010000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018101user-specificB1C2-1-1
Flask3Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific4090000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018111user-specificB2C3-1-1
Flask4Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific4000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018101user-specificB2C4-1-1
Flask5Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003205000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018111user-specificB1C5-1-2
Flask6Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003204050000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018101user-specificB1C6-1-2
Flask7Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003204000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018111user-specificB2C7-1-2
Flask8Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003209000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001601hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018101user-specificB2C8-1-2
Flask1Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific9000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018112user-specificB1C1-2-1
Flask2Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific9000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018102user-specificB1C2-2-1
Flask3Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific9000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018112user-specificB2C3-2-1
Flask4Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpaleuser-specific9000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS218user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018102user-specificB2C4-2-1
Flask5Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003209000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018112user-specificB1C5-2-2
Flask6Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003209000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018102user-specificB1C6-2-2
Flask7Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003209000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:0000027500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'control'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018112user-specificB2C7-2-2
Flask8Chlamydomonas reinhardtiiNCBITaxonhttp://purl.obolibrary.org/obo/NCBITaxon_3055cc-1690user-specificP12852 · PSBQ_CHLREuser-specificpMS218 (mCherry)user-specificpMS219 (complementing PsbQ)user-specificgreenPATOhttps://bioregistry.io/PATO:00003209000000cells per milliliterUOhttps://bioregistry.io/UO:0000201TAP; doi:10.1101/pdb.rec560user-specific50milliliterUOhttps://bioregistry.io/UO:000009824hourUOhttps://bioregistry.io/UO:0000032500microeinstein per square meter per secondUOhttps://bioregistry.io/UO:000016024degree celsiusUOhttps://bioregistry.io/UO:00000271200microeinstein per square meter per secondUOhttps://bioregistry.io/UO:00001602hourUOhttps://bioregistry.io/UO:0000032CentrifugationNCIThttps://bioregistry.io/NCIT:C164104degree celsiusUOhttps://bioregistry.io/UO:0000027pMS219user-specificexperimental condition 'case'MShttps://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_10018102user-specificB2C8-2-2
Release Notes

Currently Work in Progress 🚧

Versions
Version Name Release on
1.0.0 RPTU - MBS, growth 01/01/0001