| Aerial conditions protocol for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.1 |
01/01/0001 |
Aerial conditions, phenotyping, Plant, metadata , study, MIAPPE |
145 |
cbfe3f69-e62f-4c79-81a5-867efed8fed0 |
|---|
| Agronomy - Biomass composition analysis |
Template for describing biomass composition analyses in agricultural experi... |
1.0.0 |
06/13/2025 |
MIAPPE, plant material, moisture content, chemical composition |
1 |
65726b0e-fe6e-4f46-9b26-24c5e7b00d56 |
|---|
| Agronomy - Chemical applications |
Template to describe chemical application processes in agricultural experim... |
1.0.0 |
06/13/2025 |
crop management, agricultural process, chemical pest control, chemical weed control, growth regulator |
1 |
a4e505c2-f9d8-4456-824d-547d8231222c |
|---|
| Agronomy - Crop residue incorporation |
|
1.0.0 |
06/13/2025 |
agronomy, crop management, crop residues |
1 |
e76e6138-ee72-4a1b-a414-997d81efa13e |
|---|
| Agronomy - Fields |
Template to describe field attributes in agricultural experiments. Fields a... |
1.0.0 |
06/13/2025 |
agronomy, agricultural field, experimental site |
1 |
9955d18c-aef1-463c-a5dc-b883ea1405a7 |
|---|
| Agronomy - Harvest |
Template to describe harvest processes in agricultural experiments |
1.0.0 |
06/13/2025 |
agricultural process, crop management, harvesting |
1 |
563bc79f-5a0d-4038-898f-0fed125f166f |
|---|
| Agronomy - Inorganic fertilization |
Template to describe inorganic fertilization processes in agricultural expe... |
1.0.0 |
06/13/2025 |
agricultural process, crop management, fertilization, inorganic fertilizers |
1 |
8686d430-29bc-4735-bd8e-6f2df2dc0455 |
|---|
| Agronomy - Irrigation |
Template to describe irrigation processes in agricultural experiments |
1.0.0 |
06/13/2025 |
agricultural process, crop management, irrigation process |
1 |
337aaf24-23dc-466b-9f9d-996e12081783 |
|---|
| Agronomy - Mulching |
Template to describe mulching processes in agricultural experiments |
1.0.0 |
06/13/2025 |
agricultural process, crop management |
1 |
60039ddd-1c83-44f1-a33d-2af6a597cc0d |
|---|
| Agronomy - Observation units-Plots |
Template to describe the observation unit in agricultural experiments. en. ... |
1.0.0 |
06/13/2025 |
agronomy, field experimentation, plot design |
1 |
b6f3c070-7a56-4810-a5eb-ac3bf43cdc62 |
|---|
| Agronomy - Organic material applications |
Template to describe organic fertilization and/or amendment processes in ag... |
1.0.0 |
06/13/2025 |
agricultural process, crop management |
1 |
5978457e-46fc-47d4-8f93-cc5ad6536212 |
|---|
| Agronomy - Plant material sampling |
Template to describe the sampling of plant material in agricultural experim... |
1.0.0 |
06/13/2025 |
agricultural process, crop management, plant material, sampling |
1 |
e9d90c92-f245-4a4f-afc5-0a4bf75c6471 |
|---|
| Agronomy - Planting |
Template to describe crop planting processes, includings seeding and transp... |
1.0.0 |
06/13/2025 |
agricultural process, crop management, sowing, transplanting |
1 |
1ddb87b3-10ca-4ffd-a4ac-df708382f711 |
|---|
| Agronomy - Tillage |
Template to describe tillage processes in agricultural experiments |
1.0.0 |
06/13/2025 |
agricultural process, crop management, soil management, tillage |
1 |
5ff9326a-fac3-4626-bec7-237cce911f06 |
|---|
| Agronomy - Wheat Yield Components |
Template for describing yield component analysis in wheat agricultural expe... |
1.0.0 |
06/13/2025 |
MIAPPE, wheat, yield components |
1 |
b8e5de1b-387b-4629-8875-93e080dca335 |
|---|
| Agronomy - wheatPhenology |
Template to describe wheat growth stage monitoring in agricultural experime... |
1.0.0 |
06/13/2025 |
MIAPPE, phenology, decimal code |
1 |
926920cf-2e7e-49f1-8270-73d045ce6218 |
|---|
| ArrayExpress - Microarray |
Template with the mandatory information about a microarray assay for submit... |
1.0.0 |
05/15/2025 |
Microarray, Transcriptomics, mandatory |
120 |
0e8f3aec-afc0-448a-9290-ef5e495bafb5 |
|---|
| ArrayExpress - Plant sample |
Template with the mandatory sample information for submitting functional ge... |
1.0.6 |
05/23/2025 |
Plant, sample, Transcriptomics, mandatory |
434 |
a2670eec-163d-4fc3-bfe5-7c17b77ce9a6 |
|---|
| ArrayExpress - Sequencing library |
Template with the mandatory sequencing library information for submitting f... |
1.0.7 |
06/13/2025 |
Sequencing Library, Transcriptomics, mandatory |
435 |
4f800135-d67c-4277-8333-185c6de712f9 |
|---|
| Bacterial growth conditions |
Template to describe growth conditions for bacterial cultures |
1.0.0 |
01/01/0001 |
growth, culture conditions, Bacteria |
145 |
9edb4416-b582-493e-99a4-7260e76d80f2 |
|---|
| Buffer Preparation |
A template describing general buffer preparation process. |
1.0.0 |
01/01/0001 |
Buffer, Preparation |
145 |
51fb3e05-d49d-4675-88f6-3fbf3be7d46d |
|---|
| CIMR - Chromatography |
Template for chromatography assays based on the Core Information For Metabo... |
1.0.0 |
01/01/0001 |
CIMR, Metabolomics, Chromatography, chemical analysis |
145 |
b250a40f-1aa9-45a5-b759-672802c1aaa6 |
|---|
| CIMR - Mass spectrometry |
Template for mass spectrometry assays based on the Core Information For Met... |
1.0.0 |
01/01/0001 |
Mass Spectrometry, Metabolomics, CIMR, chemical analysis |
145 |
2aa992c6-93d8-436e-a974-93ce73280505 |
|---|
| CIMR - Sample preparation |
Template to describe sampling and extraction for a metabolomics sample base... |
1.0.0 |
01/01/0001 |
CIMR, Sampling, extraction, Metabolomics |
145 |
1e0cd74f-e1cb-418d-af58-7240aa8ccefe |
|---|
| Characteristics for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.1 |
01/01/0001 |
characteristic, material, phenotyping, Plant, metadata , study, MIAPPE |
290 |
a0aae042-e9d7-49e4-b2e4-727e7f501594 |
|---|
| DNA extraction |
Template to describe the extraction of DNA. |
1.1.8 |
01/01/0001 |
extraction, DNA |
290 |
a927fd4c-851f-4a69-8aa0-fc680f495a64 |
|---|
| ENA - Gene promoter annotated sequence |
Template for submission of uni- or bidirectional gene promoter regions to E... |
1.0.3 |
01/01/0001 |
mandatory, promoter, Sequencing Data, Genomics |
290 |
8b8964c3-d7fd-4b6f-a33d-5b40a413ed9b |
|---|
| ENA - Genome assembly |
Template with the mandatory information for submitting a genome assembly to... |
1.0.0 |
01/01/0001 |
Genomics, Assembly, mandatory |
145 |
f064f32b-d0c5-45bb-b237-07e5944a1663 |
|---|
| ENA - Plant sample |
Template for the ENA (European Nucleotide Archive) checklist for submission... |
1.0.4 |
01/01/0001 |
mandatory, Plant, sample, nucleotide, Sequencing Data, Genomics, Transcriptomics |
433 |
046a7143-98f9-41c3-8815-d1b6597b964f |
|---|
| ENA - Plant sample - extension |
Extension template for the ENA (European Nucleotide Archive) checklist for ... |
1.0.3 |
01/01/0001 |
Plant, sample, nucleotide, Sequencing Data, Genomics, Transcriptomics |
290 |
374bd596-e04e-4fad-bc02-466a57f09d3f |
|---|
| ENA - Raw sequencing reads |
Template for submission of sequencing reads to ENA (European Nucleotide Arc... |
1.0.5 |
01/01/0001 |
mandatory, Sequencing Data, Genomics, Transcriptomics |
290 |
e1a8a31c-521b-4302-ad78-954c1acc6588 |
|---|
| ENA - Single CDS annotated sequence |
Template for submission of complete or partial coding sequence (CDS) derive... |
1.0.3 |
01/01/0001 |
mandatory, Sequencing Data, Coding Region, Genomics, sequence annotation |
290 |
aee468d3-cc59-46ee-a4e6-d0c4f6461282 |
|---|
| Environment - FAO Soil site description |
Template for annotating soil site information, registration, and location a... |
1.0.0 |
06/13/2025 |
soil |
1 |
edc793c0-8098-4e2b-8c16-1778a2065d64 |
|---|
| Environment - FAO Soil surface assessment |
Template for describing the soil surface according to the FAO soil descript... |
1.0.0 |
06/13/2025 |
MIAPPE, soil |
1 |
1ef6859b-df62-4f1b-aeaa-da2ba052997d |
|---|
| Environment - Soil elemental composition |
Template for describing the elemental composition of soil samples in the la... |
1.0.0 |
06/13/2025 |
MIAPPE, soil |
1 |
05eb1ba9-fff2-4e2e-adff-f9e43413f9a8 |
|---|
| Environment - Soil fertility |
Template for describing the chemical fertility in soil samples from laborat... |
1.0.0 |
06/13/2025 |
MIAPPE, soil |
1 |
f6cecf8f-916f-422f-ab27-dfb511a14882 |
|---|
| Environment - Soil organic matter |
Template for describing the organic matter composition in soil samples from... |
1.0.0 |
06/13/2025 |
MIAPPE, soil |
1 |
65bf3357-ae59-4054-97ca-18305b861c11 |
|---|
| Environment - Soil particle size distribution |
Template for describing laboratory-measured particle size distribution in s... |
1.0.0 |
06/13/2025 |
MIAPPE, soil, |
1 |
4aff0ab3-ba4c-4531-90b6-e01182763600 |
|---|
| Environment - Soil profile layers |
Template for describing field measurements in soil profile layers/horizons ... |
1.0.0 |
06/13/2025 |
field soil, soil profiles, instrument |
1 |
69893007-1b54-49cd-8506-fe00c36d5f05 |
|---|
| Environment - Soil water retention |
Template for describing laboratory-estimated plant available water in soil ... |
1.0.0 |
06/13/2025 |
MIAPPE, soil, soil water retention |
1 |
57f816b7-94e9-4be4-a4b6-c978c0884df0 |
|---|
| Event protocol for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.1 |
01/01/0001 |
Event, phenotyping, Plant, metadata , study, MIAPPE |
145 |
2da5c8b0-5dc3-41ee-bc66-3b08ae81b1af |
|---|
| GEO - High-throughput sequencing - Assay |
Template to describe the RNA high-throughput sequencing assay, i.e. the act... |
1.0.5 |
05/22/2025 |
nucleic acid library construction protocol, RNA-Seq, Transcriptomics, mandatory |
325 |
d5be4b6a-c720-404e-9e14-21ba698e2a37 |
|---|
| GEO - High-throughput sequencing - Computational analysis |
Template to describe the computational analysis of RNA-Seq data with the mi... |
1.0.2 |
01/01/0001 |
RNA-Seq, Transcriptomics, mandatory, Data Processing, Computation |
290 |
7475522c-e019-4641-93fe-7d5cb1731080 |
|---|
| GEO - High-throughput sequencing - Sample |
Template to describe the minimal information about the sample for submissio... |
1.0.3 |
05/21/2025 |
Plant, sample, Transcriptomics, mandatory |
329 |
664a4204-5879-4227-8e73-3624957b58d9 |
|---|
| Gas exchange measurement |
Assay template to describe gas exchange (CO2 assimilation, transpiration et... |
1.0.2 |
01/01/0001 |
leaf gas exchange, stomatal conductance, photosynthesis, measurement |
290 |
c264fcb2-706b-41ef-813b-b409f8757aa1 |
|---|
| Genome assembly |
Template to describe the computational steps of a genome assembly |
1.1.9 |
01/01/0001 |
Genomics, Assembly, DNA Sequencing |
433 |
11b23480-80a8-4d95-a2bb-b3e9c7d53a23 |
|---|
| Genome assembly report |
Assembly report statistics for QC |
1.0.0 |
01/01/0001 |
Sequence assembly report |
145 |
528bb073-da5a-4176-89c0-0688467c4a23 |
|---|
| Genomics assay |
Template to describe preparation and measurement of DNA-Seq for genomics. |
1.1.7 |
01/01/0001 |
Genomics, assay, DNA Sequencing |
145 |
9ef58c21-e0b8-4ab9-9728-96d06037c7c8 |
|---|
| Golden Gate cloning |
A template to describe preparation of Golden Gate cloning mix according to ... |
1.0.0 |
01/01/0001 |
Cloning |
145 |
41f67274-1097-4144-9422-40b72febe911 |
|---|
| Growth chamber |
Covers minimum growth chamber conditions |
1.0.3 |
01/01/0001 |
Plant, growth, growth chamber |
145 |
d81e996d-f5b7-42ae-ab21-4b9b745926ce |
|---|
| Growth protocol for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.1 |
01/01/0001 |
growth, phenotyping, Plant, metadata , study, MIAPPE |
145 |
8b6dbcdb-52cb-4497-8919-64449dce747a |
|---|
| Imaging assay |
Template that describes the measurement working steps for imaging-related r... |
2.0.0 |
01/01/0001 |
assay, imaging |
290 |
e60ba840-a310-4ea9-8a1e-5f4c979473f3 |
|---|
| Imaging computation |
Template that describes the computational working steps for imaging-related... |
2.0.0 |
01/01/0001 |
imaging, Computation, Analysis |
290 |
0708cd5a-f3b4-400c-a188-9c6ac477906c |
|---|
| Imaging sample |
Template that describes the sample used for imaging. Template is adapted fr... |
2.0.0 |
01/01/0001 |
imaging, sample |
290 |
8fbc694a-5adf-4f97-8cd8-3bcedc37c98d |
|---|
| Introduction_of_recognition_sites |
A minimal template describing the process of introducing enzyme recognition... |
1.0.1 |
01/01/0001 |
Recognition, Site, Enzyme |
145 |
fe71e18d-a189-4c6e-a5bf-60953bdf7926 |
|---|
| MAdLand Fragmentanalyzer |
Fragment- or Bioanalyzer measurement |
1.0.0 |
01/01/0001 |
Fragmentanalyzer, Bioanalyzer |
145 |
0fe0093a-fcf8-4c63-b0e3-d5172a2ba8fb |
|---|
| MAdLand Nanodrop |
Nanodrop measurement |
1.0.0 |
01/01/0001 |
Nanodrop, measurement |
145 |
d7baa4b8-7b16-4a42-b44d-f2a9df93b932 |
|---|
| MAdLand Sample information |
MAdLand metadata temp sheet (heckathon) |
1.0.0 |
01/01/0001 |
MAdLand, Plant, Sampling |
145 |
bac2606c-ac54-4abf-8a76-257bdc777e4d |
|---|
| MAdLand cultivation conditions |
Cultivation conditions will be provided here |
1.0.0 |
01/01/0001 |
cultivation, growth factors, conditions |
145 |
17602c2c-0500-43b9-9697-7c638aee2271 |
|---|
| MAdLand harvesting |
Harvesting parameter will be provided here |
1.0.0 |
01/01/0001 |
harvesting |
145 |
c89a6b92-9f00-4076-8130-87d802a51669 |
|---|
| MIAPE - Chromatography |
Template to describe proteomic chromatography assays based on the Minimum I... |
1.0.1 |
01/01/0001 |
MIAPE, Proteomics, Chromatography |
288 |
1d02548f-d586-4af7-bcc8-e3aca73586d4 |
|---|
| MIAPE - Gel electrophoresis |
Template with the metadata about a gel electrophoresis experiment based on ... |
1.0.0 |
01/01/0001 |
Gel Electrophoresis, Proteomics, MIAPE |
145 |
7c7567e5-7915-4d57-9c13-3150db0aeb29 |
|---|
| MIAPE - Mass spectrometer |
Template containing the instrument-related metadata from the Minimum Inform... |
1.0.0 |
01/01/0001 |
MIAPE, Mass Spectrometry, Proteomics |
145 |
27b5ca88-9223-4321-a422-3be57ad510da |
|---|
| MIAPE - Mass spectrometry data |
Template to describe data acquisition and analysis of mass spectrometry bas... |
1.0.0 |
01/01/0001 |
MIAPE, Mass Spectrometry, Proteomics, Data Acquisition |
145 |
9047e5ab-3bbe-4966-b26b-ff5d0c5b2015 |
|---|
| MIAPPE - Biological material |
Template to describe the biological material according to MIAPPE v.1.1. |
1.0.3 |
01/01/0001 |
MIAPPE, Biological Material, plant material |
290 |
0695f30b-e3d7-4c6b-b3c2-4ebdccab8670 |
|---|
| MIAPPE - Experimental factors |
Template that includes all experimental factors from the MIAPPE appendix. |
1.0.3 |
01/01/0001 |
MIAPPE, Environment, Experimental Factor |
145 |
25a1a248-f9c0-4af4-b6d1-980b2dc8427d |
|---|
| MIAPPE - Growth facility |
Template to describe the environmental parameters related to the growth fac... |
1.0.1 |
01/01/0001 |
MIAPPE, Growth facility |
290 |
589c3ed0-7ab3-4a03-8f48-85984b44a549 |
|---|
| MIAPPE - Metadata |
Template to describe additional information regarding investigation and stu... |
1.0.2 |
01/01/0001 |
MIAPPE, study, Investigation |
290 |
c7850e9a-510e-4212-aebf-5126c020ee95 |
|---|
| MIAPPE - Nutrients |
Template to describe the nutrients used for plant growth according to MIAPP... |
1.0.1 |
01/01/0001 |
MIAPPE, nutrient, Growth Medium |
290 |
7062c3fd-bde2-4d6d-aa02-8e4b65914d81 |
|---|
| MIAPPE - Observation unit and sample |
Template to describe the observation unit (source) and the sample from a MI... |
1.0.3 |
01/01/0001 |
MIAPPE, Observation Unit, study, growth |
145 |
15c74f32-be49-4154-8421-325580721bbc |
|---|
| MIAPPE - Observed variable |
Template to describe the observed variable according to MIAPPE v.1.1.
|
1.0.0 |
01/01/0001 |
MIAPPE, Trait, Method, Observed Variable |
145 |
de71561e-7d60-4ab2-8881-4105f97e8703 |
|---|
| MIAPPE - Rooting conditions |
Template to describe the rooting conditions within a MIAPPE experiment. Not... |
1.0.2 |
01/01/0001 |
MIAPPE, Rooting condition |
290 |
e9e118af-b483-4d48-869f-c4973c787fae |
|---|
| MIGS - Genome Sequence |
This template contains the mandatory information based on the Minimum Infor... |
1.0.0 |
01/01/0001 |
MIGS, Genomics, DNA Sequencing, mandatory, Assembly |
145 |
0eaba7d3-041a-461e-9a58-c5c6635df24d |
|---|
| MIMAG - Metagenome-assembled genome |
Template that includes the minimum required information to describe the ana... |
1.0.2 |
01/01/0001 |
Metagenomics, MIMAG, mandatory, Data Processing, Computation, Assembly |
290 |
3f40a3f8-5bc1-423e-adf4-74b92cee1181 |
|---|
| MIMIx |
Template with the Minimal Information about a Molecular Interaction experim... |
1.0.0 |
01/01/0001 |
MIMIx, MIAPE, molecular interaction, Proteomics |
145 |
d3adc6d9-f80c-4f2b-9588-65d5d64121b5 |
|---|
| MIMS - Metagenomics |
Template that includes the minimum required information to describe a metag... |
1.0.2 |
01/01/0001 |
MIMS, mandatory, Metagenomics, Assembly |
290 |
b0d579bd-8045-4b1c-b836-5c46ec19af2b |
|---|
| MISAG - Single amplified genome |
Template with the mandatory metadata based on the Minimum Information about... |
1.0.0 |
01/01/0001 |
MISAG, Genomics, DNA Sequencing, single amplified genome, mandatory, bacterial genomes, Assembly |
145 |
4a82415e-a7c0-4b42-a465-5af9504e7f03 |
|---|
| MIxS - Sample information |
Template with the mandatory information with respect to the sample based on... |
1.0.0 |
01/01/0001 |
sample, material, MIxS, Genomics, mandatory |
145 |
5b8e5e07-45a6-43db-88db-369f047106a8 |
|---|
| MPIMP - Fernie, chromatography |
Assay protocol for chromatography as performed in AG Fernie at the MPIMP |
1.0.1 |
01/01/0001 |
Chromatography, metabolite |
145 |
161310a0-2c25-4f0e-a225-44b4a12c2569 |
|---|
| MPIMP - Fernie, mass spectrometry |
Assay protocol for mass spectrometry as performed in AG Fernie at the MPIMP |
1.0.1 |
01/01/0001 |
Mass Spectrometry, metabolite |
145 |
ab29af8f-8622-4c5e-9158-bb6b6e3f2fde |
|---|
| MPIMP - Fernie, metabolite extraction |
Assay protocol for metabolite extraction as performed in AG Fernie at the M... |
1.0.1 |
01/01/0001 |
metabolite, extraction |
145 |
6158be27-92a8-4f61-945c-0e31b7cc45cc |
|---|
| MTH00029 |
GC-MS (GC-MSD) - target metabolites |
1.0.0 |
01/01/0001 |
Metabolomics, assay, Mass Spectrometry |
145 |
f58a5d85-3472-4704-a7dc-9f66a4f45ad7 |
|---|
| MetaboLights - Chromatography |
Template with the extraction and chromatography protocol information for GC... |
1.0.4 |
01/01/0001 |
Metabolomics, metabolite, Chromatography |
290 |
065e2028-49d6-410d-8847-7c0fec07bb3f |
|---|
| MetaboLights - Mass spectrometry |
Template with the mass spectrometry protocol information for GC- or LC-MS a... |
1.0.3 |
01/01/0001 |
Metabolomics, Mass Spectrometry, metabolite |
290 |
0f126e2e-44ea-4b40-8b2d-2d22716023d4 |
|---|
| MetaboLights - NMR sample |
Template with extraction and NMR sample protocol information for submission... |
1.0.3 |
01/01/0001 |
NMR, sample, Metabolomics, metabolite |
290 |
72690ffe-513f-407c-bed3-f0025ab71d5c |
|---|
| MetaboLights - NMR spectroscopy |
Template with NMR spectroscopy protocol information for submission to Metab... |
1.0.3 |
01/01/0001 |
NMR spectroscopy assay, Metabolomics, metabolite |
290 |
07a50660-ec41-499a-8a44-7259c38c46a8 |
|---|
| Metabolite extraction |
Template to describe the extraction of metabolites for a metabolomics assay... |
1.1.8 |
01/01/0001 |
extraction, Metabolomics |
145 |
66b8fd18-dc96-4b67-8708-7697afbff11f |
|---|
| Metabolomics MassSpec assay |
Template to describe preparation and measurement of metabolomics samples |
1.2.0 |
01/01/0001 |
Metabolomics, assay, Mass Spectrometry |
290 |
b80a7c05-d6eb-428d-b843-bceeb76af642 |
|---|
| Metabolomics computational analysis |
Template to describe the computational analysis of metabolomics data. |
1.1.9 |
01/01/0001 |
Metabolomics, Mass Spectrometry, Data Processing |
290 |
1683fef8-eb0f-4f29-bf9f-6d69e3d2e045 |
|---|
| Metagenomics - Re-analysis |
Template for the collection of published metagenomic samples for re-analysi... |
1.0.1 |
01/01/0001 |
Metagenomics |
290 |
1bf3697b-3da5-4f8b-9302-b88daaefbe73 |
|---|
| MibiNet Lichen Phenotyping |
This is a template for lichen imaging in nature enviroment. |
1.0.0 |
05/15/2025 |
lichen material, imaging |
119 |
97c7328d-c982-422e-82d8-c1c7285c118d |
|---|
| MibiNet Lichen sampling |
This is a template for lichen sampling, describing the sampling method and ... |
1.0.0 |
05/15/2025 |
lichen material, Sampling |
119 |
b73a1c83-1fae-4c94-ab96-fb807f2d9861 |
|---|
| MibiNet Microarray |
Template to describe an microarray experiment. |
1.0.0 |
01/01/0001 |
Microarray |
145 |
958c1126-5e07-4f37-8be8-48e7ff46d837 |
|---|
| MibiNet bioreactor cultivation conditions |
Template to describe cultivation conditions in a bioreactor experiment. |
1.0.1 |
01/01/0001 |
growth condition, bioreactor, cultivation |
290 |
858fa02e-ec1b-4fb5-94ff-43a949ae83c9 |
|---|
| MibiNet cell harvesting |
Describes a method of harvesting cells from cultures by centrifugation. |
1.0.1 |
01/01/0001 |
cell, microbes, harvesting method, centrifugation |
290 |
e0db4e41-2464-4b74-a98d-672febd38c0d |
|---|
| MibiNet microbial cultivation conditions |
Describes culture conditions of a microbial culture (e.g. bacteria, fungi,) |
1.0.1 |
01/01/0001 |
culture, Bacteria, Fungi |
290 |
77ea0839-60d8-4504-8ae9-270f8aa6764b |
|---|
| Minimal info plant material |
Minimal information template to annotate plant material. |
1.0.0 |
01/01/0001 |
|
145 |
29ada286-e0cd-42b4-a400-12fb7c4cbb4f |
|---|
| Next generation sequencing |
Minimal template for next generation sequencing |
1.0.3 |
01/01/0001 |
Next Generation Sequencing, assay |
290 |
145a3170-58e0-4b1c-b790-b71e5d0084cc |
|---|
| Nutrition protocol for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.0 |
01/01/0001 |
nutrition, phenotyping, Plant, metadata , study, MIAPPE |
145 |
3fbee354-9ea7-4b91-a25c-69e32228a590 |
|---|
| PRIDE |
A template for the metadata required for PRIDE (Proteomics Identifications ... |
1.0.4 |
01/01/0001 |
Proteomics, Mass Spectrometry, mandatory |
433 |
b98e2f29-3984-4812-ba14-c1c40f8703e5 |
|---|
| Phenotyping protocol for Assay file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.0 |
01/01/0001 |
phenotyping, Plant, metadata , assay, MIAPPE |
145 |
fd3dabc9-d263-4d91-b49b-384188eb4d49 |
|---|
| Plant growth conditions |
Template to describe a plant growth conditions. |
1.0.1 |
01/01/0001 |
Plant, growth, study |
290 |
f12e98ee-a4e7-4ada-ba56-1e13cce1a44b |
|---|
| Plant sampling |
Template to describe sample collection from plants. |
1.0.1 |
01/01/0001 |
Plant, Sampling |
145 |
2c588520-2675-444b-87dc-82f3fca431f9 |
|---|
| Plant source material |
Material to start a plant study. |
1.0.4 |
01/01/0001 |
Plant, Biological Material, Sampling |
290 |
a1c3bff6-b7da-4602-adf0-da8cacf0bd07 |
|---|
| Plasmid construction |
Template to describe construction of a plasmid for transformation |
1.0.0 |
01/01/0001 |
plasmid, construction |
145 |
0d08b33d-f526-4260-b0a7-3c9cf8299a34 |
|---|
| Protein extraction |
This protocol focuses on lab works regarding protein extraction. |
1.1.9 |
01/01/0001 |
extraction, Proteomics, protein |
290 |
cf1fb06f-d72e-43d9-be25-4ea6c25f03e2 |
|---|
| Proteomics MassSpec assay |
This protocol focuses on the measurement of the mass spectrometer, its sett... |
1.2.0 |
01/01/0001 |
assay, Proteomics, measurement, Mass Spectrometry |
290 |
64edd0b7-c2da-4bd0-b6f3-3d150a6151a8 |
|---|
| Proteomics computational analysis |
This protocol tackles the steps after obtaining measurement results in term... |
1.1.7 |
01/01/0001 |
Proteomics, Data Processing, Computation, software |
290 |
6364b4a3-aae5-40c8-a5e3-221139d1a7db |
|---|
| RNA extraction |
Template to describe the extraction of RNA. |
1.2.1 |
01/01/0001 |
extraction, RNA |
290 |
52953c18-2f3e-41e4-9b64-e4b39a6f4685 |
|---|
| RNASeq assay |
Template to describe preparation and measurement of RNA-Seq. |
1.2.1 |
01/01/0001 |
Transcriptomics, RNA-Seq, assay |
290 |
9a78e1cc-5e8e-441b-9b7e-eb41cf93d574 |
|---|
| RNASeq computational analysis |
Template to describe the computational analysis of RNA-Seq data. |
1.2.0 |
01/01/0001 |
Transcriptomics, RNA-Seq, Computation |
145 |
007b0410-87dd-4f76-b9d7-4eb5432af367 |
|---|
| RPTU - MBS - data processing |
Template for computational analysis of the mass spectrometry facility at th... |
1.0.0 |
01/01/0001 |
Algae, Proteomics, Data Processing |
145 |
d92d7d3e-72a2-49e9-afbc-022ff5b8eaf2 |
|---|
| RPTU - MBS, cell disruption |
Template for cell disruption of the mass spectrometry facility at the depar... |
1.0.0 |
01/01/0001 |
Algae, extraction, Proteomics |
145 |
559a486c-3f1a-458a-ad5d-a28eb58602ed |
|---|
| RPTU - MBS, growth |
Template for algae growth of the mass spectrometry facility at the departme... |
1.0.0 |
01/01/0001 |
Algae, growth, Proteomics |
145 |
2365b905-4cd0-4a0f-828e-d19d1dc2a4b2 |
|---|
| RPTU - MBS, growth TurboID |
Template for algae growth of the mass spectrometry facility at the departme... |
1.0.0 |
01/01/0001 |
Algae, growth, Proteomics |
145 |
6f6f542a-a50f-4400-a341-2e5a3a9a0822 |
|---|
| RPTU - MBS, mass spectrometry |
Template for the mass spectrometry assay of the mass spectrometry facility ... |
1.0.0 |
01/01/0001 |
Algae, assay, Proteomics |
145 |
429f9e81-8881-4da0-b139-d5f7ed7a0fc3 |
|---|
| RPTU - MBS, protein extraction |
Template for protein extraction of the mass spectrometry facility at the de... |
1.0.0 |
01/01/0001 |
Algae, extraction, Proteomics |
145 |
bc8a2518-98ae-4739-896e-863f97eb2b4b |
|---|
| RPTU - MBS, protein standard preparation |
Template for mixing the internal protein standard of the mass spectrometry ... |
1.0.0 |
01/01/0001 |
Algae, sample preparation, Proteomics |
145 |
98cff6e0-e943-4da7-89a2-6bf103de4bab |
|---|
| RPTU - MBS, sample preparation |
Template for MS sample preparation of the mass spectrometry facility at the... |
1.0.0 |
01/01/0001 |
Algae, sample preparation, Proteomics |
145 |
73144f25-aa6a-4d9f-809d-f8d1bf979a63 |
|---|
| RPTU - PP, Sugar Extraction |
Preliminary template
|
0.0.1 |
01/01/0001 |
|
145 |
f99ac3c9-f85d-4ea7-ba23-c3dbd8efb976 |
|---|
| RPTU - PP, Sugar Measurement |
Preliminary template
|
0.0.1 |
01/01/0001 |
|
145 |
5f56de72-1c86-4d23-9ee5-cc1216e09e0f |
|---|
| Rooting protocol for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.0 |
01/01/0001 |
watering, phenotyping, Plant, metadata , study, MIAPPE |
145 |
37f10939-0360-41fc-9dcc-17b63cb7c2a6 |
|---|
| SRA - Sequencing |
Template to describe the sequencing assay for SRA submission. |
1.0.2 |
01/01/0001 |
mandatory, Next Generation Sequencing |
290 |
794e2271-67b8-4d5d-9102-9b16a9440579 |
|---|
| Sampling - Soil material |
Template to describe the collection of soil samples. |
1.0.0 |
06/13/2025 |
soil, sampling |
1 |
a8a1802f-b708-4245-bd5f-e1adfba511f4 |
|---|
| Sampling protocol for Assay file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.1 |
01/01/0001 |
Sampling, phenotyping, Plant, metadata , assay, MIAPPE |
145 |
30e3f0ab-c6f7-4ca9-9945-b96623b203b4 |
|---|
| Sequence_LC-QQQ |
Template for a sample sequence list covering the major information of a typ... |
0.0.1 |
01/01/0001 |
|
143 |
7a915569-5426-4d69-9bb8-0265f470f5b0 |
|---|
| Strain construction |
Template to describe design and construction of bacterial strains |
1.0.0 |
01/01/0001 |
strain, construction, Bacteria |
145 |
f66b75d4-5a12-4484-be80-7b661b7bfaa7 |
|---|
| Study minimal MPIMP Fernie |
Minimal set of study information. |
1.0.0 |
01/01/0001 |
study, Plant, growth |
145 |
013782f0-a16d-4c1a-8c6c-449ecb57159c |
|---|
| Training - Sugar Extraction |
Training template |
0.0.1 |
01/01/0001 |
|
145 |
2e35b778-4545-428f-a969-96c1b50f6f43 |
|---|
| Training - Sugar Measurement |
Training template |
0.0.1 |
01/01/0001 |
|
145 |
c6e2485f-ce7d-4dc9-a407-5fa88f89d5b0 |
|---|
| Watering protocol for Study file MIAPPE |
This template belongs to a serie of templates created for describing Metada... |
1.0.2 |
01/01/0001 |
watering, phenotyping, Plant, metadata , study, MIAPPE |
145 |
d088bf2c-a6e1-4bea-b428-ca1c6646c60a |
|---|
| Weather - Time series |
Template for describing weather data time series, as measured by weather st... |
1.0.0 |
06/13/2025 |
MIAPPE, ENVO, weather |
1 |
43af20cc-6344-437d-9004-0dc427e8baf7 |
|---|
| minSCe - Data analysis |
Template to describe cell- and sample-associated information derived from d... |
1.0.1 |
05/22/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, Single Cell Data, minSCe, Transcriptomics |
149 |
4f1e2ebe-cd0d-442e-add3-9a270270278c |
|---|
| minSCe - Single cell isolation |
Template to describe the isolation process of the single cells based on the... |
1.0.0 |
05/15/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, single cell isolation, minSCe, Transcriptomics |
120 |
4283f655-2280-4965-9bfd-31350a1aa50a |
|---|
| minSCe - Single cell library construction |
Template to describe the library construction process of a single cell susp... |
1.0.1 |
05/22/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, library preparation, minSCe, Transcriptomics |
149 |
6437bea2-fe9d-49a1-8a0f-b850933d50af |
|---|
| minSCe - Single cell sequencing |
Template to describe the sequencing process of a single cell sequencing exp... |
1.0.1 |
05/22/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, minSCe, Transcriptomics |
149 |
d0193a62-a2aa-432e-a307-8454fa9317ed |
|---|
| phototrophic cell culture |
Study file for phototrophic cell culture experiments |
1.2.0 |
05/27/2025 |
CMML, Metabolomics, Microbiology, Experiment Metadata |
158 |
b78c2922-c4ec-48f3-862e-021991fd5205 |
|---|
| study sheet for plant samples |
study sheet for plant culture metabolomics experiments |
1.1.0 |
05/27/2025 |
Metabolomics, Plant, culture |
300 |
226689ec-4be3-4143-b775-f8856c8ed6a5 |
|---|
| study sheet heterotrophic microbial cell culture |
study sheet for heterotrophic microbial cell culture metabolomics experimen... |
1.1.0 |
05/27/2025 |
Metabolomics, Microbiology, cell culture |
156 |
362253dd-0834-46d2-bed9-29c66b264e9c |
|---|