Swate template ArrayExpress - Sequencing library
Sequencing Library, Transcriptomics, mandatory
v1.0.7 released on 06/13/2025
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Template Content
Building Blocks + example values
| Input [Sample Name] | Parameter [nucleic acid extraction protocol] | Term Source REF (EFO:0002944) | Term Accession Number (EFO:0002944) | Parameter [experiment type] | Term Source REF (AFR:0002229) | Term Accession Number (AFR:0002229) | Parameter [library layout] | Term Source REF (DPBO:0000015) | Term Accession Number (DPBO:0000015) | Characteristic [library source] | Term Source REF (GENEPIO:0001965) | Term Accession Number (GENEPIO:0001965) | Parameter [library strategy] | Term Source REF (GENEPIO:0001973) | Term Accession Number (GENEPIO:0001973) | Parameter [library selection] | Term Source REF (GENEPIO:0001940) | Term Accession Number (GENEPIO:0001940) | Parameter [nucleic acid library construction protocol] | Term Source REF (EFO:0004184) | Term Accession Number (EFO:0004184) | Parameter [nucleic acid sequencing protocol] | Term Source REF (EFO:0004170) | Term Accession Number (EFO:0004170) | Output [Data] | Data Format | Data Selector Format |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RNA_extraction.txt | transcription profiling by high throughput sequencing | EFO | https://bioregistry.io/EFO:0002770 | single-end | DPBO | http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000086 | transcriptomic source | GENEPIO | http://purl.obolibrary.org/obo/GENEPIO_0001971 | RNA-Seq | EFO | https://bioregistry.io/EFO:0008896 | RT-PCR method | GENEPIO | http://purl.obolibrary.org/obo/GENEPIO_0001959 | library_construction.txt | RNASeq_protocol.txt |