Swate template GEO - High-throughput sequencing - Computational analysis
RNA-Seq, Transcriptomics, mandatory, Data Processing, Computation
v1.0.2 released on 01/01/0001
by Martin Kuhl, Stella Eggels, Hannah Dörpholz
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Parameter [Genome Assembly Version] | Term Source REF (NCIT:C164815) | Term Accession Number (NCIT:C164815) | Parameter [Data Processing] | Term Source REF (NCIT:C47925) | Term Accession Number (NCIT:C47925) | Parameter [processed data file format] | Term Source REF (DPBO:0000027) | Term Accession Number (DPBO:0000027) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| data processing protocol | DPBO | http://purl.org/nfdi4plants/ontology/dpbo/DPBO_1000178 | computation.txt | B73 RefGen_v4 | Read count extraction and normalization were performed using CLC genomic benchwor | txt |