Swate template MibiNet microbial cultivation conditions
v2.0.0 released on 11/02/2026
3 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Protocol Uri | Characteristic [Organism] | Term Source REF (MIAPPE:0041) | Term Accession Number (MIAPPE:0041) | Parameter [Biological replicate] | Term Source REF (NFDI4PSO:0000042) | Term Accession Number (NFDI4PSO:0000042) | Component [cultivation device] | Term Source REF () | Term Accession Number () | Parameter [cultivation container] | Term Source REF () | Term Accession Number () | Parameter [culture medium] | Term Source REF (OBI:0000079) | Term Accession Number (OBI:0000079) | Parameter [culture medium volume] | Unit | Term Source REF (DPBO:1000155) | Term Accession Number (DPBO:1000155) | Parameter [Inoculation] | Term Source REF (NCIT:C68774) | Term Accession Number (NCIT:C68774) | Parameter [start OD600] | Term Source REF (DPBO:0000101) | Term Accession Number (DPBO:0000101) | Parameter [growth time] | Unit | Term Source REF (DPBO:0000100) | Term Accession Number (DPBO:0000100) | Parameter [temperature] | Unit | Term Source REF (EFO:0001702) | Term Accession Number (EFO:0001702) | Parameter [shaker frequency] | Unit | Term Source REF () | Term Accession Number () | Parameter [humidity] | Unit | Term Source REF (PATO:0015009) | Term Accession Number (PATO:0015009) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| WT | ./protocols/Cultivation_condition.md | Corynebacterium glutamicum | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_1718 | 1 | orbital shaker | 100 ml shake flask | BHI | 10 | milliliter | UO | https://bioregistry.io/UO:0000098 | from plate | 0.1 | 8 | hour | UO | https://bioregistry.io/UO:0000032 | 30 | degree Celsius | UO | https://bioregistry.io/UO:0000027 | 200 | Revolution per Minute | NCIT | https://bioregistry.io/NCIT:C70469 | 80 | percent | UO | https://bioregistry.io/UO:0000187 | preculture_WT_1 |