Swate template ArrayExpress - Plant sample
Plant, sample, Transcriptomics, mandatory
v1.0.6 released on 05/23/2025
25 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Characteristic [organism] | Term Source REF (OBI:0100026) | Term Accession Number (OBI:0100026) | Characteristic [cultivar] | Term Source REF (EFO:0005136) | Term Accession Number (EFO:0005136) | Characteristic [age] | Term Source REF (EFO:0000246) | Term Accession Number (EFO:0000246) | Characteristic [developmental stage] | Term Source REF (EFO:0000399) | Term Accession Number (EFO:0000399) | Characteristic [Genotype] | Term Source REF (NCIT:C16631) | Term Accession Number (NCIT:C16631) | Characteristic [organism part] | Term Source REF (EFO:0000635) | Term Accession Number (EFO:0000635) | Characteristic [plant material type] | Term Source REF (DPBO:0000177) | Term Accession Number (DPBO:0000177) | Parameter [growth protocol] | Term Source REF (EFO:0003789) | Term Accession Number (EFO:0003789) | Parameter [sample collection protocol] | Term Source REF (EFO:0005518) | Term Accession Number (EFO:0005518) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Hordeum vulgare | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_4513 | Golden promise | 25 days | whole plant flowering stage | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0007016 | Wild Type | NCIT | https://bioregistry.io/NCIT:C62195 | leaf | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0025034 | RNA | TOPIC | http://purl.obolibrary.org/obo/TOPIC_0099 | plant_growth.txt | sample_collection.txt |