Swate template ArrayExpress - Plant sample
Plant, sample, Genomics, Transcriptomics, mandatory
v1.0.2 released on 01/01/0001
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Characteristic [organism] | Term Source REF (OBI:0100026) | Term Accession Number (OBI:0100026) | Characteristic [Variety] | Term Source REF (NCIT:C62709) | Term Accession Number (NCIT:C62709) | Characteristic [age] | Term Source REF (EFO:0000246) | Term Accession Number (EFO:0000246) | Characteristic [plant structure development stage] | Term Source REF (PO:0009012) | Term Accession Number (PO:0009012) | Characteristic [Genotype] | Term Source REF (NCIT:C16631) | Term Accession Number (NCIT:C16631) | Characteristic [plant anatomical entity] | Term Source REF (PO:0025131) | Term Accession Number (PO:0025131) | Characteristic [plant material] | Term Source REF (FOODON:00004331) | Term Accession Number (FOODON:00004331) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sample collection protocol | EFO | https://bioregistry.io/EFO:0005518 | sample_collection.txt | Hordeum vulgare | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_4513 | Golden Promise | 25 days | flowering stage | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0007616 | Wild Type | NCIT | https://bioregistry.io/NCIT:C62195 | leaf | PO | https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0025034 | DNA | NCIT | https://bioregistry.io/NCIT:C449 |