Swate template Protein extraction
extraction, Proteomics, protein
v1.1.9 released on 01/01/0001
by Oliver Maus, Dominik Brilhaus
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Component [cleavage agent name] | Term Source REF (MS:1001045) | Term Accession Number (MS:1001045) | Characteristic [molecule] | Term Source REF (MS:1000859) | Term Accession Number (MS:1000859) | Characteristic [sample state] | Term Source REF (MS:1000003) | Term Accession Number (MS:1000003) | Parameter [staining] | Unit | Term Source REF (OBI:0302887) | Term Accession Number (OBI:0302887) | Component [extraction buffer] | Term Source REF (DPBO:0000050) | Term Accession Number (DPBO:0000050) | Parameter [pH] | Unit | Term Source REF (UO:0000196) | Term Accession Number (UO:0000196) | Parameter [sample pre-fractionation] | Term Source REF (MS:1002493) | Term Accession Number (MS:1002493) | Component [protein column] | Term Source REF (OBI:0000468) | Term Accession Number (OBI:0000468) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Trypsin | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1001251 | protein | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1000882 | solution | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1000051 | IHC slide staining | OBI | https://bioregistry.io/OBI:0002123 | Good's buffer substance | CHEBI | https://bioregistry.io/CHEBI:39011 | 10 | Reversed-Phase Liquid Chromatography | NCIT | https://bioregistry.io/NCIT:C161770 | Vydac C4 reversed-phase column |