Swate template GEO - High-throughput sequencing - Assay
nucleic acid library construction protocol, RNA-Seq, Transcriptomics, mandatory
v1.0.5 released on 05/22/2025
by Martin Kuhl, Stella Eggels, Hannah Dörpholz
35 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Protocol Type | Term Source REF (DPBO:1000161) | Term Accession Number (DPBO:1000161) | Protocol REF | Parameter [library layout] | Term Source REF (DPBO:0000015) | Term Accession Number (DPBO:0000015) | Parameter [library strategy] | Term Source REF (GENEPIO:0001973) | Term Accession Number (GENEPIO:0001973) | Component [next generation sequencing instrument model] | Term Source REF (DPBO:0000040) | Term Accession Number (DPBO:0000040) | Output [Data] | Data Format | Data Selector Format |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| library construction protocol | libraryconstruction.txt | single-end | DPBO | http://purl.org/nfdi4plants/ontology/dpbo/DPBO_0000086 | RNA-Seq | EFO | https://bioregistry.io/EFO:0008896 | Illumina HiSeq 2000 | OBI | https://bioregistry.io/OBI:0002001 |