Swate template RPTU - MBS - data processing
Algae, Proteomics, Data Processing
v1.0.0 released on 01/01/0001
by Frederik Sommer, Martin Kuhl, Oliver Maus
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Component [analysis software] | Term Source REF (MS:1001456) | Term Accession Number (MS:1001456) | Component [analysis software] | Term Source REF (MS:1001456) | Term Accession Number (MS:1001456) | Component [analysis software] | Term Source REF (MS:1001456) | Term Accession Number (MS:1001456) | Component [analysis software] | Term Source REF (MS:1001456) | Term Accession Number (MS:1001456) | Component [analysis software] | Term Source REF (MS:1001456) | Term Accession Number (MS:1001456) | Parameter [Variable modification] | Unit | Term Source REF (MS:1003022) | Term Accession Number (MS:1003022) | Parameter [Variable modification] | Term Source REF (MS:1003022) | Term Accession Number (MS:1003022) | Parameter [Fixed modification] | Term Source REF (MS:1003021) | Term Accession Number (MS:1003021) | Parameter [number of missed cleavages] | Term Source REF (MS:1003044) | Term Accession Number (MS:1003044) | Parameter [spectral library] | Term Source REF (MS:1003170) | Term Accession Number (MS:1003170) | Parameter [DB source UniProt] | Term Source REF (MS:1001254) | Term Accession Number (MS:1001254) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MS245_001 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_002 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_003 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_004 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_005 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_006 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_007 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_008 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_009 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_010 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_011 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_012 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_013 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_014 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_015 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_016 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d | |||||||
| MS245_017 | Fragpipe V19.1 | user-specific | Philosopher | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003018 | PeptideProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002287 | ProteinProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002289 | PTMProphet | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002292 | M ox, UNIMOD(35) | unimod | user-specific | N-term acetyl, UNIMOD(1) | user-specific | C cam, UNIMOD(4) | user-specific | 2 | user-specific | PROSIT | user-specific | study/resources/1PperGenUP000006548_3702.fasta | user-specific | MS280_4FragDia_PrositLib.d |
Release Notes
Currently Work in Progress 🚧Versions
| Version | Name | Release on |
| 1.0.0 | RPTU - MBS - data processing | 01/01/0001 |