Swate template MibiNet cell harvesting
cell, microbes, harvesting method, centrifugation
v2.0.0 released on 11/02/2026
3 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Protocol Uri | Characteristic [Organism] | Term Source REF (MIAPPE:0041) | Term Accession Number (MIAPPE:0041) | Parameter [optical density] | Term Source REF () | Term Accession Number () | Parameter [harvesting volume] | Unit | Term Source REF () | Term Accession Number () | Component [device] | Term Source REF (OBI:0000968) | Term Accession Number (OBI:0000968) | Parameter [Centrifugation Tube] | Term Source REF (NCIT:C126367) | Term Accession Number (NCIT:C126367) | Parameter [Centrifugation Time] | Unit | Term Source REF (NCIT:C178881) | Term Accession Number (NCIT:C178881) | Parameter [Centrifugation speed] | Unit | Term Source REF () | Term Accession Number () | Parameter [centrifugation temperature] | Unit | Term Source REF () | Term Accession Number () | Parameter [culture medium] | Term Source REF (OBI:0000079) | Term Accession Number (OBI:0000079) | Parameter [culture medium volume] | Unit | Term Source REF (DPBO:1000155) | Term Accession Number (DPBO:1000155) | Output [Sample Name] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| maincult_WT_1 | ./protocols/Cell_harvesting.md | Corynebacterium glutamicum | NCBITaxon | http://purl.obolibrary.org/obo/NCBITaxon_1718 | 24.6 | 1 | milliliter | UO | https://bioregistry.io/UO:0000098 | Eppendorf Centrifuge 5425 G | 1.5 ml reaction tube | 3 | minute | UO | https://bioregistry.io/UO:0000031 | 5000 | Revolution per Minute | NCIT | https://bioregistry.io/NCIT:C70469 | 4 | degree Celsius | UO | https://bioregistry.io/UO:0000027 | CGXII medium 2% glucose | 1 | milliliter | UO | https://bioregistry.io/UO:0000098 | pellet_WT_1 |