Swate template Proteomics MassSpec assay
assay, Proteomics, measurement, Mass Spectrometry
v1.1.8 released on 01/01/0001
by Oliver Maus
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Parameter [Experiment Type] | Term Source REF (PRIDE:0000457) | Term Accession Number (PRIDE:0000457) | Parameter [Quantification method] | Term Source REF (PRIDE:0000307) | Term Accession Number (PRIDE:0000307) | Parameter [technical replicate] | Term Source REF (MS:1001808) | Term Accession Number (MS:1001808) | Parameter [Variable modification] | Term Source REF (MS:1003022) | Term Accession Number (MS:1003022) | Parameter [Fixed modification] | Term Source REF (MS:1003021) | Term Accession Number (MS:1003021) | Parameter [sample volume] | Unit | Term Source REF (DPBO:0010013) | Term Accession Number (DPBO:0010013) | Parameter [injection volume setting] | Unit | Term Source REF (AFR:0001577) | Term Accession Number (AFR:0001577) | Parameter [Number of injections] | Unit | Term Source REF () | Term Accession Number () | Parameter [instrument model] | Unit | Term Source REF (MS:1000031) | Term Accession Number (MS:1000031) | Parameter [duration] | Unit | Term Source REF (PATO:0001309) | Term Accession Number (PATO:0001309) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Top-down proteomics | user-specific | APEX - Absolute Protein Expression | user-specific | L-valine removal | MOD | http://purl.obolibrary.org/obo/MOD_01650 | 5x(13)C,1x(15)N labeled L-valine | MOD | http://purl.obolibrary.org/obo/MOD_00588 | microliter | UO | https://bioregistry.io/UO:0000101 | TripleTOF 4600 | count unit | UO | https://bioregistry.io/UO:0000189 | second | UO | https://bioregistry.io/UO:0000010 | |||||||||||||||||
| Shotgun proteomics | user-specific | Peptide counting | user-specific | N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-valine | MOD | http://purl.obolibrary.org/obo/MOD_01665 | L-valine amide | CHEBI | https://bioregistry.io/CHEBI:21418 | microliter | UO | https://bioregistry.io/UO:0000101 | 4000 QTRAP | count unit | UO | https://bioregistry.io/UO:0000189 | second | UO | https://bioregistry.io/UO:0000010 | |||||||||||||||||
| Chemical cross-linking coupled with mass spectrometry proteomics | user-specific | 180 | user-specific | N-acetyl-L-valine | CHEBI | https://bioregistry.io/CHEBI:21565 | L-valine removal | MOD | http://purl.obolibrary.org/obo/MOD_01650 | microliter | UO | https://bioregistry.io/UO:0000101 | 6224 Time-of-Flight LC/MS | count unit | UO | https://bioregistry.io/UO:0000189 | second | UO | https://bioregistry.io/UO:0000010 | |||||||||||||||||
| Affinity purification coupled with mass spectrometry proteomics | user-specific | AQUA | user-specific | 3-(carboxamidomethylthio)propanoylated residue | MOD | http://purl.obolibrary.org/obo/MOD_00612 | N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-valine | MOD | http://purl.obolibrary.org/obo/MOD_01665 | microliter | UO | https://bioregistry.io/UO:0000101 | OMEGA | count unit | UO | https://bioregistry.io/UO:0000189 | second | UO | https://bioregistry.io/UO:0000010 | |||||||||||||||||
| SRM/MRM | user-specific | iTRAQ | user-specific | N-acylated residue | MOD | http://purl.obolibrary.org/obo/MOD_00670 | N-acetyl-L-valine | CHEBI | https://bioregistry.io/CHEBI:21565 | microliter | UO | https://bioregistry.io/UO:0000101 | amaZon X | count unit | UO | https://bioregistry.io/UO:0000189 | second | UO | https://bioregistry.io/UO:0000010 | |||||||||||||||||
| SWATH MS | user-specific | Spectrum count/molecular weight | user-specific | O-acylated residue | MOD | http://purl.obolibrary.org/obo/MOD_00671 | N-carboxy-L-valine | MOD | http://purl.obolibrary.org/obo/MOD_01874 | microliter | UO | https://bioregistry.io/UO:0000101 | MAT900XP Trap | count unit | UO | https://bioregistry.io/UO:0000189 | second | UO | https://bioregistry.io/UO:0000010 |