Swate template Proteomics MassSpec assay
assay, Proteomics, measurement, Mass Spectrometry
v1.2.0 released on 01/01/0001
by Oliver Maus
145 Downloads
Template Content
Building Blocks + example values
| Input [Source Name] | Parameter [Experiment Type] | Term Source REF (PRIDE:0000457) | Term Accession Number (PRIDE:0000457) | Parameter [Quantification method] | Term Source REF (PRIDE:0000307) | Term Accession Number (PRIDE:0000307) | Parameter [technical replicate] | Term Source REF (MS:1001808) | Term Accession Number (MS:1001808) | Parameter [Variable modification] | Term Source REF (MS:1003022) | Term Accession Number (MS:1003022) | Parameter [Fixed modification] | Term Source REF (MS:1003021) | Term Accession Number (MS:1003021) | Parameter [sample volume] | Unit | Term Source REF (DPBO:0010013) | Term Accession Number (DPBO:0010013) | Parameter [injection volume setting] | Unit | Term Source REF (AFR:0001577) | Term Accession Number (AFR:0001577) | Parameter [Number of injections] | Unit | Term Source REF (DPBO:0000114) | Term Accession Number (DPBO:0000114) | Component [instrument model] | Term Source REF (MS:1000031) | Term Accession Number (MS:1000031) | Parameter [Duration] | Unit | Term Source REF (NCIT:C25330) | Term Accession Number (NCIT:C25330) | Output [Data] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| top-down proteomics | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003351 | APEX - Absolute Protein Expression | PRIDE | http://purl.obolibrary.org/obo/PRIDE_0000441 | run generated from same sample | L-valine removal | MOD | http://purl.obolibrary.org/obo/MOD_01650 | 5x(13)C,1x(15)N labeled L-valine | MOD | http://purl.obolibrary.org/obo/MOD_00588 | 100 | microliter | UO | https://bioregistry.io/UO:0000101 | 2 | microliter | UO | https://bioregistry.io/UO:0000101 | 100 | count unit | UO | https://bioregistry.io/UO:0000189 | TripleTOF 4600 | MS | https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1002583 | second | UO | https://bioregistry.io/UO:0000010 |