Swate template Imaging assay
v2.0.0 released on 01/01/0001
by Ksenia Krooß, Sabrina Zander, Stella Eggels, Christine Rempfer
145 Downloads
Template Content
Building Blocks + example values
| Input [Sample Name] | Component [Imaging System] | Term Source REF (NCIT:C78808) | Term Accession Number (NCIT:C78808) | Component [Objective] | Term Source REF (REPR:Objective) | Term Accession Number (REPR:Objective) | Component [Imaging Software Name] | Term Source REF (NCIT:C175898) | Term Accession Number (NCIT:C175898) | Parameter [Imaging Technique] | Term Source REF (NCIT:C17369) | Term Accession Number (NCIT:C17369) | Parameter [excitation method] | Term Source REF (DPBO:0000124) | Term Accession Number (DPBO:0000124) | Parameter [Detector] | Term Source REF (NCIT:C41276) | Term Accession Number (NCIT:C41276) | Parameter [Excitation Wavelength] | Term Source REF (NCIT:C204095) | Term Accession Number (NCIT:C204095) | Parameter [detection wavelength] | Term Source REF (AFQ:0000029) | Term Accession Number (AFQ:0000029) | Parameter [image dimensionality] | Term Source REF (DPBO:1000141) | Term Accession Number (DPBO:1000141) | Parameter [Pixel Size] | Term Source REF (NCIT:C94953) | Term Accession Number (NCIT:C94953) | Parameter [raw data file format] | Term Source REF (DPBO:0000021) | Term Accession Number (DPBO:0000021) | Output [Data] | Data Format | Data Selector Format |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Zeiss LSM780 | C-Apochromat 40x/1.20 W Korr M27 | Zeiss ZEN 3.5 (blue edition) | DPBO | http://purl.org/nfdi4plants/ontology/dpbo/DPBO_1000195 | laser scanning confocal microscope | OBI | https://bioregistry.io/OBI:0001125 | argon ion laser | OBI | https://bioregistry.io/OBI:0400010 | photomultiplier tube | OBI | https://bioregistry.io/OBI:0400084 | 488 nm | 490-550 nm | z-stack | 0,21 x 0,21 x 1 (XYZ) [µm] | czi |