| ArrayExpress - Microarray |
Template with the mandatory information about a microarray assay for submit... |
1.0.0 |
05/15/2025 |
Microarray, Transcriptomics, mandatory |
256 |
0e8f3aec-afc0-448a-9290-ef5e495bafb5 |
|---|
| ArrayExpress - Plant sample |
Template with the mandatory sample information for submitting functional ge... |
1.0.6 |
05/23/2025 |
Plant, sample, Transcriptomics, mandatory |
978 |
a2670eec-163d-4fc3-bfe5-7c17b77ce9a6 |
|---|
| ArrayExpress - Sequencing library |
Template with the mandatory sequencing library information for submitting f... |
1.0.7 |
06/13/2025 |
Sequencing Library, Transcriptomics, mandatory |
1115 |
4f800135-d67c-4277-8333-185c6de712f9 |
|---|
| CIMR - Chromatography |
Template for chromatography assays based on the Core Information For Metabo... |
1.0.0 |
01/01/0001 |
CIMR, Metabolomics, Chromatography, chemical analysis |
281 |
b250a40f-1aa9-45a5-b759-672802c1aaa6 |
|---|
| CIMR - Mass spectrometry |
Template for mass spectrometry assays based on the Core Information For Met... |
1.0.0 |
01/01/0001 |
Mass Spectrometry, Metabolomics, CIMR, chemical analysis |
281 |
2aa992c6-93d8-436e-a974-93ce73280505 |
|---|
| CIMR - Sample preparation |
Template to describe sampling and extraction for a metabolomics sample base... |
1.0.0 |
01/01/0001 |
CIMR, Sampling, extraction, Metabolomics |
281 |
1e0cd74f-e1cb-418d-af58-7240aa8ccefe |
|---|
| DNA extraction |
Template to describe the extraction of DNA. |
1.1.8 |
01/01/0001 |
extraction, DNA |
562 |
a927fd4c-851f-4a69-8aa0-fc680f495a64 |
|---|
| ENA - Gene promoter annotated sequence |
Template for submission of uni- or bidirectional gene promoter regions to E... |
1.0.3 |
01/01/0001 |
mandatory, promoter, Sequencing Data, Genomics |
562 |
8b8964c3-d7fd-4b6f-a33d-5b40a413ed9b |
|---|
| ENA - Genome assembly |
Template with the mandatory information for submitting a genome assembly to... |
1.0.0 |
01/01/0001 |
Genomics, Assembly, mandatory |
281 |
f064f32b-d0c5-45bb-b237-07e5944a1663 |
|---|
| ENA - Plant sample |
Template for the ENA (European Nucleotide Archive) checklist for submission... |
1.0.4 |
01/01/0001 |
mandatory, Plant, sample, nucleotide, Sequencing Data, Genomics, Transcriptomics |
841 |
046a7143-98f9-41c3-8815-d1b6597b964f |
|---|
| ENA - Plant sample - extension |
Extension template for the ENA (European Nucleotide Archive) checklist for ... |
1.0.3 |
01/01/0001 |
Plant, sample, nucleotide, Sequencing Data, Genomics, Transcriptomics |
562 |
374bd596-e04e-4fad-bc02-466a57f09d3f |
|---|
| ENA - Raw sequencing reads |
Template for submission of sequencing reads to ENA (European Nucleotide Arc... |
1.0.5 |
01/01/0001 |
mandatory, Sequencing Data, Genomics, Transcriptomics |
562 |
e1a8a31c-521b-4302-ad78-954c1acc6588 |
|---|
| ENA - Single CDS annotated sequence |
Template for submission of complete or partial coding sequence (CDS) derive... |
1.0.3 |
01/01/0001 |
mandatory, Sequencing Data, Coding Region, Genomics, sequence annotation |
562 |
aee468d3-cc59-46ee-a4e6-d0c4f6461282 |
|---|
| GEO - High-throughput sequencing - Assay |
Template to describe the RNA high-throughput sequencing assay, i.e. the act... |
1.0.5 |
05/22/2025 |
nucleic acid library construction protocol, RNA-Seq, Transcriptomics, mandatory |
733 |
d5be4b6a-c720-404e-9e14-21ba698e2a37 |
|---|
| GEO - High-throughput sequencing - Computational analysis |
Template to describe the computational analysis of RNA-Seq data with the mi... |
1.0.2 |
01/01/0001 |
RNA-Seq, Transcriptomics, mandatory, Data Processing, Computation |
562 |
7475522c-e019-4641-93fe-7d5cb1731080 |
|---|
| GEO - High-throughput sequencing - Sample |
Template to describe the minimal information about the sample for submissio... |
1.0.3 |
05/21/2025 |
Plant, sample, Transcriptomics, mandatory |
737 |
664a4204-5879-4227-8e73-3624957b58d9 |
|---|
| Gas exchange measurement |
Assay template to describe gas exchange (CO2 assimilation, transpiration et... |
1.0.2 |
01/01/0001 |
leaf gas exchange, stomatal conductance, photosynthesis, measurement |
562 |
c264fcb2-706b-41ef-813b-b409f8757aa1 |
|---|
| Genome assembly |
Template to describe the computational steps of a genome assembly |
1.1.9 |
01/01/0001 |
Genomics, Assembly, DNA Sequencing |
841 |
11b23480-80a8-4d95-a2bb-b3e9c7d53a23 |
|---|
| Genomics assay |
Template to describe preparation and measurement of DNA-Seq for genomics. |
1.1.7 |
01/01/0001 |
Genomics, assay, DNA Sequencing |
281 |
9ef58c21-e0b8-4ab9-9728-96d06037c7c8 |
|---|
| Growth chamber |
Covers minimum growth chamber conditions |
1.0.3 |
01/01/0001 |
Plant, growth, growth chamber |
281 |
d81e996d-f5b7-42ae-ab21-4b9b745926ce |
|---|
| Imaging assay |
Template that describes the measurement working steps for imaging-related r... |
2.0.0 |
01/01/0001 |
assay, imaging |
562 |
e60ba840-a310-4ea9-8a1e-5f4c979473f3 |
|---|
| Imaging computation |
Template that describes the computational working steps for imaging-related... |
2.0.0 |
01/01/0001 |
imaging, Computation, Analysis |
562 |
0708cd5a-f3b4-400c-a188-9c6ac477906c |
|---|
| Imaging sample |
Template that describes the sample used for imaging. Template is adapted fr... |
2.0.0 |
01/01/0001 |
imaging, sample |
562 |
8fbc694a-5adf-4f97-8cd8-3bcedc37c98d |
|---|
| MIAPE - Chromatography |
Template to describe proteomic chromatography assays based on the Minimum I... |
1.0.1 |
01/01/0001 |
MIAPE, Proteomics, Chromatography |
560 |
1d02548f-d586-4af7-bcc8-e3aca73586d4 |
|---|
| MIAPE - Gel electrophoresis |
Template with the metadata about a gel electrophoresis experiment based on ... |
1.0.0 |
01/01/0001 |
Gel Electrophoresis, Proteomics, MIAPE |
281 |
7c7567e5-7915-4d57-9c13-3150db0aeb29 |
|---|
| MIAPE - Mass spectrometer |
Template containing the instrument-related metadata from the Minimum Inform... |
1.0.0 |
01/01/0001 |
MIAPE, Mass Spectrometry, Proteomics |
281 |
27b5ca88-9223-4321-a422-3be57ad510da |
|---|
| MIAPE - Mass spectrometry data |
Template to describe data acquisition and analysis of mass spectrometry bas... |
1.0.0 |
01/01/0001 |
MIAPE, Mass Spectrometry, Proteomics, Data Acquisition |
281 |
9047e5ab-3bbe-4966-b26b-ff5d0c5b2015 |
|---|
| MIAPPE - Biological material |
Template to describe the biological material according to MIAPPE v.1.2. |
1.0.4 |
09/15/2025 |
MIAPPE, Biological Material, plant material, Phenomics |
639 |
0695f30b-e3d7-4c6b-b3c2-4ebdccab8670 |
|---|
| MIAPPE - Experimental factors |
Template that includes all experimental factors from the MIAPPE appendix. |
1.0.3 |
01/01/0001 |
MIAPPE, Environment, Experimental Factor |
281 |
25a1a248-f9c0-4af4-b6d1-980b2dc8427d |
|---|
| MIAPPE - Growth facility |
Template to describe the environmental parameters related to the growth fac... |
1.0.1 |
01/01/0001 |
MIAPPE, Growth facility |
562 |
589c3ed0-7ab3-4a03-8f48-85984b44a549 |
|---|
| MIAPPE - Metadata |
Template to describe additional information regarding investigation and stu... |
1.0.2 |
01/01/0001 |
MIAPPE, study, Investigation |
562 |
c7850e9a-510e-4212-aebf-5126c020ee95 |
|---|
| MIAPPE - Nutrients |
Template to describe the nutrients used for plant growth according to MIAPP... |
1.0.1 |
01/01/0001 |
MIAPPE, nutrient, Growth Medium |
562 |
7062c3fd-bde2-4d6d-aa02-8e4b65914d81 |
|---|
| MIAPPE - Observation unit and sample |
Template to describe the observation unit (source) and the sample from a MI... |
1.0.4 |
09/15/2025 |
MIAPPE, Observation Unit, study, growth, Phenomics |
358 |
15c74f32-be49-4154-8421-325580721bbc |
|---|
| MIAPPE - Observed variable |
Template to describe the observed variable according to MIAPPE v.1.2.
|
1.0.1 |
09/15/2025 |
MIAPPE, Trait, Method, Observed Variable, Phenomics |
358 |
de71561e-7d60-4ab2-8881-4105f97e8703 |
|---|
| MIAPPE - Rooting conditions |
Template to describe the rooting conditions within a MIAPPE experiment. Not... |
1.0.2 |
01/01/0001 |
MIAPPE, Rooting condition |
562 |
e9e118af-b483-4d48-869f-c4973c787fae |
|---|
| MIGS - Genome Sequence |
This template contains the mandatory information based on the Minimum Infor... |
1.0.0 |
01/01/0001 |
MIGS, Genomics, DNA Sequencing, mandatory, Assembly |
281 |
0eaba7d3-041a-461e-9a58-c5c6635df24d |
|---|
| MIMAG - Metagenome-assembled genome |
Template that includes the minimum required information to describe the ana... |
1.0.2 |
01/01/0001 |
Metagenomics, MIMAG, mandatory, Data Processing, Computation, Assembly |
562 |
3f40a3f8-5bc1-423e-adf4-74b92cee1181 |
|---|
| MIMIx |
Template with the Minimal Information about a Molecular Interaction experim... |
1.0.0 |
01/01/0001 |
MIMIx, MIAPE, molecular interaction, Proteomics |
281 |
d3adc6d9-f80c-4f2b-9588-65d5d64121b5 |
|---|
| MIMS - Metagenomics |
Template that includes the minimum required information to describe a metag... |
1.0.2 |
01/01/0001 |
MIMS, mandatory, Metagenomics, Assembly |
562 |
b0d579bd-8045-4b1c-b836-5c46ec19af2b |
|---|
| MISAG - Single amplified genome |
Template with the mandatory metadata based on the Minimum Information about... |
1.0.0 |
01/01/0001 |
MISAG, Genomics, DNA Sequencing, single amplified genome, mandatory, bacterial genomes, Assembly |
281 |
4a82415e-a7c0-4b42-a465-5af9504e7f03 |
|---|
| MIxS - Sample information |
Template with the mandatory information with respect to the sample based on... |
1.0.0 |
01/01/0001 |
sample, material, MIxS, Genomics, mandatory |
281 |
5b8e5e07-45a6-43db-88db-369f047106a8 |
|---|
| MetaboLights - Chromatography |
Template with the extraction and chromatography protocol information for GC... |
1.0.6 |
02/13/2026 |
Metabolomics, metabolite, Chromatography |
701 |
065e2028-49d6-410d-8847-7c0fec07bb3f |
|---|
| MetaboLights - Data transformation |
Template with the mandatory metadata about data transformation for data sub... |
1.0.0 |
02/13/2026 |
Metabolomics, mandatory, Data Transformation |
5 |
440c08ae-b416-4d1f-ba4f-116cb9aa81e8 |
|---|
| MetaboLights - Mass spectrometry |
Template with the mass spectrometry protocol information for GC- or LC-MS a... |
1.0.4 |
02/13/2026 |
Metabolomics, Mass Spectrometry, metabolite |
567 |
0f126e2e-44ea-4b40-8b2d-2d22716023d4 |
|---|
| MetaboLights - NMR sample |
Template with extraction and NMR sample protocol information for submission... |
1.0.4 |
02/13/2026 |
NMR, sample, Metabolomics, metabolite |
567 |
72690ffe-513f-407c-bed3-f0025ab71d5c |
|---|
| MetaboLights - NMR spectroscopy |
Template with NMR spectroscopy protocol information for submission to Metab... |
1.0.5 |
02/13/2026 |
NMR spectroscopy assay, Metabolomics, metabolite |
591 |
07a50660-ec41-499a-8a44-7259c38c46a8 |
|---|
| MetaboLights - Sample |
Template with the mandatory sample information for submitting data to Metab... |
1.0.0 |
07/02/2025 |
sample, Metabolomics, mandatory |
133 |
72f5a542-a263-4cdc-86fe-83bf252d646d |
|---|
| Metabolite extraction |
Template to describe the extraction of metabolites for a metabolomics assay... |
1.1.8 |
01/01/0001 |
extraction, Metabolomics |
281 |
66b8fd18-dc96-4b67-8708-7697afbff11f |
|---|
| Metabolomics MassSpec assay |
Template to describe preparation and measurement of metabolomics samples |
1.2.0 |
01/01/0001 |
Metabolomics, assay, Mass Spectrometry |
562 |
b80a7c05-d6eb-428d-b843-bceeb76af642 |
|---|
| Metabolomics computational analysis |
Template to describe the computational analysis of metabolomics data. |
1.1.9 |
01/01/0001 |
Metabolomics, Mass Spectrometry, Data Processing |
562 |
1683fef8-eb0f-4f29-bf9f-6d69e3d2e045 |
|---|
| Metagenomics - Re-analysis |
Template for the collection of published metagenomic samples for re-analysi... |
1.0.1 |
01/01/0001 |
Metagenomics |
562 |
1bf3697b-3da5-4f8b-9302-b88daaefbe73 |
|---|
| PRIDE |
A template for the metadata required for PRIDE (Proteomics Identifications ... |
1.0.5 |
11/11/2025 |
Proteomics, Mass Spectrometry, mandatory |
917 |
b98e2f29-3984-4812-ba14-c1c40f8703e5 |
|---|
| Plant growth conditions |
Template to describe a plant growth conditions. |
1.0.1 |
01/01/0001 |
Plant, growth, study |
562 |
f12e98ee-a4e7-4ada-ba56-1e13cce1a44b |
|---|
| Plant sampling |
Template to describe sample collection from plants. |
1.0.1 |
01/01/0001 |
Plant, Sampling |
281 |
2c588520-2675-444b-87dc-82f3fca431f9 |
|---|
| Plant source material |
Material to start a plant study. |
1.0.4 |
01/01/0001 |
Plant, Biological Material, Sampling |
562 |
a1c3bff6-b7da-4602-adf0-da8cacf0bd07 |
|---|
| Protein extraction |
This protocol focuses on lab works regarding protein extraction. |
1.1.9 |
01/01/0001 |
extraction, Proteomics, protein |
562 |
cf1fb06f-d72e-43d9-be25-4ea6c25f03e2 |
|---|
| Proteomics MassSpec assay |
This protocol focuses on the measurement of the mass spectrometer, its sett... |
1.2.0 |
01/01/0001 |
assay, Proteomics, measurement, Mass Spectrometry |
562 |
64edd0b7-c2da-4bd0-b6f3-3d150a6151a8 |
|---|
| Proteomics computational analysis |
This protocol tackles the steps after obtaining measurement results in term... |
1.1.7 |
01/01/0001 |
Proteomics, Data Processing, Computation, software |
562 |
6364b4a3-aae5-40c8-a5e3-221139d1a7db |
|---|
| Public genomic resources |
Template to describe publicly available genomes that are being used as a re... |
1.0.0 |
01/22/2026 |
Genomics, Genome, resource, Publication |
12 |
f02bf3e4-9514-4745-aba1-52e4ebe81c5c |
|---|
| RNA extraction |
Template to describe the extraction of RNA. |
1.2.1 |
01/01/0001 |
extraction, RNA |
562 |
52953c18-2f3e-41e4-9b64-e4b39a6f4685 |
|---|
| RNASeq assay |
Template to describe preparation and measurement of RNA-Seq. |
1.2.1 |
01/01/0001 |
Transcriptomics, RNA-Seq, assay |
562 |
9a78e1cc-5e8e-441b-9b7e-eb41cf93d574 |
|---|
| RNASeq computational analysis |
Template to describe the computational analysis of RNA-Seq data. |
1.2.0 |
01/01/0001 |
Transcriptomics, RNA-Seq, Computation |
281 |
007b0410-87dd-4f76-b9d7-4eb5432af367 |
|---|
| SRA - Sequencing |
Template to describe the sequencing assay for SRA submission. |
1.0.2 |
01/01/0001 |
mandatory, Next Generation Sequencing |
562 |
794e2271-67b8-4d5d-9102-9b16a9440579 |
|---|
| minSCe - Data analysis |
Template to describe cell- and sample-associated information derived from d... |
1.0.1 |
05/22/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, Single Cell Data, minSCe, Transcriptomics |
421 |
4f1e2ebe-cd0d-442e-add3-9a270270278c |
|---|
| minSCe - Single cell isolation |
Template to describe the isolation process of the single cells based on the... |
1.0.0 |
05/15/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, single cell isolation, minSCe, Transcriptomics |
256 |
4283f655-2280-4965-9bfd-31350a1aa50a |
|---|
| minSCe - Single cell library construction |
Template to describe the library construction process of a single cell susp... |
1.0.1 |
05/22/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, library preparation, minSCe, Transcriptomics |
421 |
6437bea2-fe9d-49a1-8a0f-b850933d50af |
|---|
| minSCe - Single cell sequencing |
Template to describe the sequencing process of a single cell sequencing exp... |
1.0.1 |
05/22/2025 |
single-cell RNA sequencing assay, RNA sequencing assay, minSCe, Transcriptomics |
421 |
d0193a62-a2aa-432e-a307-8454fa9317ed |
|---|